GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000883-TA|BGIBMGA000883-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor
         (153 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   2.9  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   5.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   6.7  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    24   8.8  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    24   8.8  
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc...    24   8.8  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    24   8.8  

>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 88  YTCPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCT-NSCQN--AEH-YCPN 143
           + C +CN  +    E  S          LC+  C  C   P C  N+  N  A H  C N
Sbjct: 49  FKCVNCNKKLDPSSEDFSQDDQKQIFCKLCVDICNGC-STPICEFNAVSNSQANHPCCSN 107

Query: 144 CSAYIGN 150
           C A+I +
Sbjct: 108 CRAFINS 114


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 82  GPDPSHYTCPSCNTAIVTRVERVSTTKTHLFAALL 116
           G  P   + PSC      R E +   +THL  AL+
Sbjct: 28  GEKPFECSYPSCKKRFTRRDELIRHVRTHLRKALV 62


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 98  VTRVERVSTTKTHLFAALLCLI 119
           +  +E  ST+++ LFA LLCL+
Sbjct: 462 IVALEDFSTSRSLLFAILLCLL 483


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 121 CWPCVCIPYCTNSCQNAE 138
           C  C  I YC+  CQ A+
Sbjct: 62  CAACKIIHYCSKGCQKAD 79


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 128 PYCTNSCQNAEHYCPNCSA 146
           PY  N+C N   Y  NC++
Sbjct: 203 PYLVNTCFNGTQYPVNCNS 221


>SPBC106.07c |||N alpha-acetyltransferase Nat2
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 167

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 2  KSIKSVLGALVFNRFEGLPLTQGTNFTIFLDKADLSGTHFVPPHQNPPPYVTQPQ 56
          +++KSV   L F R   LPL    N  +   +  +S +  +PP  +PPP +T  Q
Sbjct: 6  RNLKSV--RLPFRRAPTLPLY---NVPV---RRSISSSSSIPPSSSPPPRLTITQ 52


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)

Query: 42  VPPHQNPPPYVTQP 55
           VPP +N PP VT+P
Sbjct: 210 VPPSRNVPPPVTRP 223


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.137    0.466 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 660,884
Number of Sequences: 5004
Number of extensions: 22240
Number of successful extensions: 63
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 8
length of query: 153
length of database: 2,362,478
effective HSP length: 67
effective length of query: 86
effective length of database: 2,027,210
effective search space: 174340060
effective search space used: 174340060
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 50 (24.2 bits)