Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000883-TA|BGIBMGA000883-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor
(153 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1) 31 0.42
SB_12923| Best HMM Match : zf-C3HC4 (HMM E-Value=1.1) 30 0.73
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09) 29 1.7
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 28 3.9
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15) 27 9.0
SB_36210| Best HMM Match : Peptidase_M43 (HMM E-Value=0) 27 9.0
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
Length = 530
Score = 31.1 bits (67), Expect = 0.42
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 115 LLCLIGCWPCVCIPYCTNSCQNAEHYCPNCSAYIGNYS 152
L C +GC P +C P CT +C + PN A + S
Sbjct: 441 LTCPVGC-PSMCAPSCTPACCAEQQCWPNQPALLAQQS 477
>SB_12923| Best HMM Match : zf-C3HC4 (HMM E-Value=1.1)
Length = 166
Score = 30.3 bits (65), Expect = 0.73
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 85 PSHYTCPSCNTAIVTRVERVSTTKTHLFAALLCL 118
P + TCP C IVTR S T+ +A LC+
Sbjct: 42 PVYTTCPFCQEKIVTRTSFKSGKYTYWTSACLCI 75
>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
Length = 474
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 90 CPSCNTAIV--TRVERVSTTKTHLFAALLCL---IGCWPCVC-IPYCTNSCQNAEHYCPN 143
CP CN ++ ++ T + +C+ + C C YC +C + +YCP
Sbjct: 380 CPLCNESVNGNQKIYFAMDTSYNDLTCQICMDAEVNTAFCPCGHVYCCQTCASNLYYCPL 439
Query: 144 CSAYI 148
C +I
Sbjct: 440 CKTFI 444
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 123 PCVCIPYCTNSCQNA-EHYCP-NCSAYIGNY 151
PCV YCTN A EH CP +IG+Y
Sbjct: 859 PCVKGHYCTNGTTTATEHPCPAGGKCWIGHY 889
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 104 VSTTKTHLFAALLCLIGCWPCVCIPYCTNSCQNAEHYCPNCSAYI 148
+S+ + +L C+ C P VC P C++ C Y PN ++
Sbjct: 691 LSSPEMYLPQIRQCIAPC-PQVCAPACSDICCGFGAYAPNPDTHV 734
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 85 PSHYTCPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCTNSCQNAEHYCPNC 144
P H +C C A R + + +++ CL C P C+ ++YC C
Sbjct: 768 PCHESCAECTGAGHDRCTKCNHGLVKVWSQ--CLASCPPSYFFNPRDMQCEPCDYYCSTC 825
>SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15)
Length = 582
Score = 26.6 bits (56), Expect = 9.0
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Query: 88 YTCPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCTNSCQNAEHYCPNC 144
Y CP C++A+V E S HL +C +CT CQ A H+ +C
Sbjct: 407 YYCPRCHSAVVADEEESS----HLAHCAVCFYA--------FCT-ECQGAWHHGKSC 450
>SB_36210| Best HMM Match : Peptidase_M43 (HMM E-Value=0)
Length = 882
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 124 CVCIPYCTNSCQNAEHYCPNCSAYIG 149
CV P N Q A CPNC +G
Sbjct: 742 CVLDPKAWNPMQKAPRSCPNCYIELG 767
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 91 PSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYC 130
P C + + V +S +F L + CVC+P C
Sbjct: 1133 PVCFSCVHLSVRVLSPVCPRVFTCLYACVNLSVCVCLPVC 1172
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 91 PSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYC 130
P C + + V +S +F L + CVC+P C
Sbjct: 1170 PVCFSCVHLSVRVLSPVCPRVFTCLYACVNLSVCVCLPVC 1209
>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 91 PSCNTAIVTRVER-VSTTKTHLFA----ALLCLIGCWPCVCIPYCTNSC 134
PSCN + E+ + +T + ++ C + C P C+ YC + C
Sbjct: 1323 PSCNKGCCSGSEKSIKQQETSKYGEYVVSIRCPVECRPYNCLSYCHHEC 1371
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.323 0.137 0.466
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,269,949
Number of Sequences: 59808
Number of extensions: 193615
Number of successful extensions: 586
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 21
length of query: 153
length of database: 16,821,457
effective HSP length: 76
effective length of query: 77
effective length of database: 12,276,049
effective search space: 945255773
effective search space used: 945255773
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)
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