Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000883-TA|BGIBMGA000883-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor
(153 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47069-3|CAE17781.1| 141|Caenorhabditis elegans Hypothetical pr... 71 4e-13
U67956-1|AAB07690.2| 157|Caenorhabditis elegans Hypothetical pr... 51 3e-07
AL110500-18|CAB54478.1| 118|Caenorhabditis elegans Hypothetical... 47 5e-06
AL032626-6|CAA21526.1| 132|Caenorhabditis elegans Hypothetical ... 46 1e-05
AL110500-20|CAI79282.1| 110|Caenorhabditis elegans Hypothetical... 46 2e-05
AC084153-15|AAK84589.2| 152|Caenorhabditis elegans Hypothetical... 43 1e-04
AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical... 42 2e-04
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut... 39 0.002
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion... 39 0.002
AF068714-8|AAC17809.2| 86|Caenorhabditis elegans Hypothetical ... 38 0.002
AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical ... 35 0.029
AL032626-23|CAE17974.1| 88|Caenorhabditis elegans Hypothetical... 33 0.090
AL032626-7|CAA21544.1| 79|Caenorhabditis elegans Hypothetical ... 32 0.21
AF068714-9|AAC17810.1| 87|Caenorhabditis elegans Hypothetical ... 31 0.48
Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical pr... 29 1.1
U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical pr... 29 1.5
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 29 1.5
U88309-1|AAB42331.3| 395|Caenorhabditis elegans Hypothetical pr... 28 2.6
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 28 2.6
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 28 2.6
Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical p... 27 7.8
>Z47069-3|CAE17781.1| 141|Caenorhabditis elegans Hypothetical
protein F36G3.3 protein.
Length = 141
Score = 70.9 bits (166), Expect = 4e-13
Identities = 30/70 (42%), Positives = 39/70 (55%)
Query: 80 QMGPDPSHYTCPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCTNSCQNAEH 139
++ P + CP C IVTR + V T +F A L L GCW C +P+C SC++ H
Sbjct: 67 RLEPHATKLQCPYCRMDIVTRTKSVYGLLTWIFFAALFLFGCWCCCFLPFCLRSCKDIIH 126
Query: 140 YCPNCSAYIG 149
CPNC A IG
Sbjct: 127 TCPNCRAMIG 136
>U67956-1|AAB07690.2| 157|Caenorhabditis elegans Hypothetical
protein F16F9.1 protein.
Length = 157
Score = 51.2 bits (117), Expect = 3e-07
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 89 TCPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCTNSCQNAEHYCPNCSAYI 148
TC SC + T + V + T + +L LI +P +P+C +SC++A HYCP C+A +
Sbjct: 92 TCYSCGKYVHTLPKFVIGSLTWI-VFILVLICFFPLAFVPFCLDSCKDAHHYCPRCNALL 150
Query: 149 G 149
G
Sbjct: 151 G 151
>AL110500-18|CAB54478.1| 118|Caenorhabditis elegans Hypothetical
protein Y87G2A.18 protein.
Length = 118
Score = 47.2 bits (107), Expect = 5e-06
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 85 PSHYTCPSCNTAIVTRVERVSTTKTHLFAALLCLIGC------WPCVCIPYCTNSCQNAE 138
P CP C IV+ +ERV+ + A+L +G W C+P+ + +
Sbjct: 43 PIEMDCPHCQNHIVSHIERVAGVLPWIIFAILAFLGIFLFIIPWCFCCVPFFLDQLLDVN 102
Query: 139 HYCPNCSAYIGNYS 152
H CP C ++G ++
Sbjct: 103 HSCPACKKFLGRFN 116
>AL032626-6|CAA21526.1| 132|Caenorhabditis elegans Hypothetical
protein Y37D8A.6 protein.
Length = 132
Score = 46.0 bits (104), Expect = 1e-05
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 80 QMGPDPSHYT--CPSCNTAIVTRVERVS--TTKTHLFAALLCLIGCWPCVCIPYCTNSCQ 135
+M P YT CP CNT + TRVER + T LF L +P +C +C + +
Sbjct: 59 KMAPSFEPYTEFCPRCNTNVCTRVERTMGFCSWTMLFLGLFVF---FPLLCC-FCLDGFK 114
Query: 136 NAEHYCPNCSAYI 148
++ H CPNC +
Sbjct: 115 DSRHSCPNCGTIL 127
>AL110500-20|CAI79282.1| 110|Caenorhabditis elegans Hypothetical
protein Y87G2A.19 protein.
Length = 110
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 85 PSHYTCPSCNTAIVTRVERVSTTKTHLFAALLCLIG--CWPC--VCIPYCTNSCQNAEHY 140
P CP C T + V+ T++ ++ + G P + +P+C + ++AEHY
Sbjct: 33 PQLLDCPRCKVHGETELRFVNGFFTYVSFFIILIFGFAILPLFFLWVPFCVETFKDAEHY 92
Query: 141 CPNCSAYIGNY 151
CP+C A+IG Y
Sbjct: 93 CPSCRAWIGTY 103
>AC084153-15|AAK84589.2| 152|Caenorhabditis elegans Hypothetical
protein Y22D7AL.15 protein.
Length = 152
Score = 42.7 bits (96), Expect = 1e-04
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 90 CPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCTNSCQNAEHYCPNCSAYI 148
CP C T++ TR T + + + CWP + C S ++ +H+CPNC +
Sbjct: 88 CPRCQTSVTTRTVHSIGTCWWIILFIGVFVFCWPILYCLCCAGS-KDVKHFCPNCGTML 145
>AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical
protein Y41C4A.11 protein.
Length = 386
Score = 41.9 bits (94), Expect = 2e-04
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 90 CPSCNTAIVTRVERVSTTKTHLFAALLCLIG----CWPCVCIPYCTNSCQNAEHYCPNC 144
CP C T I+T V TT + L+C G CWP + I C + ++ +H CPNC
Sbjct: 36 CPKCQTTIMTSV----TTHIGMCWWLICFFGTFLFCWP-ILICLCFDVSKDVDHNCPNC 89
>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glutamate
receptor protein1 protein.
Length = 1025
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 90 CPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCTNSCQNAEHYCPNCSAYIG 149
C C + + V R + L L ++ WPC +P +S + H CP CS +G
Sbjct: 954 CSRCRNIVESDVHRETGLFAFLSCFLFAILFLWPCSPLPCFLSSFSDFVHICPLCSHIMG 1013
Query: 150 NY 151
+
Sbjct: 1014 RF 1015
>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
ionotropic glutamatereceptor NMR-1 protein.
Length = 1025
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 90 CPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCTNSCQNAEHYCPNCSAYIG 149
C C + + V R + L L ++ WPC +P +S + H CP CS +G
Sbjct: 954 CSRCRNIVESDVHRETGLFAFLSCFLFAILFLWPCSPLPCFLSSFSDFVHICPLCSHIMG 1013
Query: 150 NY 151
+
Sbjct: 1014 RF 1015
>AF068714-8|AAC17809.2| 86|Caenorhabditis elegans Hypothetical
protein B0348.2 protein.
Length = 86
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 84 DPSHYTCPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCTNSCQNAEHYCPN 143
+P C C VTR E + + CL+ WP +C C +S ++ HYCP+
Sbjct: 17 EPHQVFCQKCQCNQVTRTETQLGACWWVVFIIGCLL-FWP-ICYWLCCDSSKDTMHYCPS 74
Query: 144 CSAYI 148
C +
Sbjct: 75 CGTLL 79
>AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical
protein Y40H7A.11 protein.
Length = 124
Score = 34.7 bits (76), Expect = 0.029
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 80 QMGPDPSHY--TCPSCNTAIVTRVERVSTTKTHLFAAL-LCLIGCWPCVCIPYCTNSCQN 136
+ P S Y C C T + TRVE L A L C C + P ++
Sbjct: 51 KQAPTYSSYQENCTRCQTLVQTRVEHKIGIMWWLCATLSFCFFFCCYLLFFPIT----KD 106
Query: 137 AEHYCPNCSAYI 148
A+H+CPNC + +
Sbjct: 107 AQHFCPNCGSLL 118
>AL032626-23|CAE17974.1| 88|Caenorhabditis elegans Hypothetical
protein Y37D8A.26 protein.
Length = 88
Score = 33.1 bits (72), Expect = 0.090
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 90 CPSCNTAIVTRVERV-STTKTHLFAALLCLIGCWPCVCIPYCTNSCQNAEHYCPNCSAYI 148
C +C + T+ E+V LF L L PC + + + H CPNC+ +
Sbjct: 27 CTNCQETVTTKTEQVFGMLNFALFITCLFL----PCFIVCFWCRCFMDVHHRCPNCNKSL 82
Query: 149 G 149
G
Sbjct: 83 G 83
>AL032626-7|CAA21544.1| 79|Caenorhabditis elegans Hypothetical
protein Y37D8A.8 protein.
Length = 79
Score = 31.9 bits (69), Expect = 0.21
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 85 PSHYTCPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCTNSCQNAEHYCPNC 144
P CP C +VT VE L L+ + + + C ++A H+CPNC
Sbjct: 12 PYQEYCPRCRCTVVTVVEYEMGCFAWLIIILIIFVAFFLIYIL--CCIDIRDAIHHCPNC 69
>AF068714-9|AAC17810.1| 87|Caenorhabditis elegans Hypothetical
protein B0348.1 protein.
Length = 87
Score = 30.7 bits (66), Expect = 0.48
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 84 DPSHYTCPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCTNSCQNAEHYCPN 143
+P CP C TR+E A + +P +C C S ++ HYCP+
Sbjct: 17 EPYSEYCPKCQCNHTTRMES-RRGNCWWIAFFIGFFLFFP-ICYWLCCQSSKDTLHYCPS 74
Query: 144 CSAYI 148
C +
Sbjct: 75 CGTLL 79
>Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical
protein T02C1.1 protein.
Length = 160
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 117 CLIGCWPCVCIPYCTNSCQNAEHYCPNCSAYIGN 150
C+I C C +C S N CP C A+ GN
Sbjct: 19 CIIECGHSYC-RFCIESHLNINEKCPLCRAHTGN 51
>U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical
protein K05F1.5 protein.
Length = 472
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 86 SHYTCPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIP-YCTNSCQNAEHYCPNC 144
+H+ C C+ +V ++ H + IG C+ C N+ +N CP+
Sbjct: 121 AHFHCKICDQ-VVWNTNQMHLRTLHFLILIGIFIGGQTLGCMKKVCGNNAKNDFRRCPDT 179
Query: 145 SAYIGNY 151
GNY
Sbjct: 180 DGSCGNY 186
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 34 ADLSGTHFVPPHQNPPPYVTQPQ 56
ADLS T +PP NPPP PQ
Sbjct: 203 ADLSNTRSLPPVNNPPPPHPIPQ 225
>U88309-1|AAB42331.3| 395|Caenorhabditis elegans Hypothetical
protein T23B3.4 protein.
Length = 395
Score = 28.3 bits (60), Expect = 2.6
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 84 DPSHYTCPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCTNSCQNAEH 139
+P +TC S +V + ++ T T LF L ++G + V I N+ N++H
Sbjct: 130 NPGKFTCDSTKGPLVDFIYQLYLTFTLLFVPLALMVGLYGNVII--TLNTAINSDH 183
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 43 PPHQNPPPYVTQPQPG 58
PP Q PPY QP PG
Sbjct: 707 PPQQQRPPYQAQPYPG 722
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 43 PPHQNPPPYVTQPQPG 58
PP Q PPY QP PG
Sbjct: 707 PPQQQRPPYQAQPYPG 722
>Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical
protein T07C4.11 protein.
Length = 367
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 122 WPCV----CIPYCTNSCQNAEHYCPNCSAYI 148
W C+ C P+ + C + +C CSA+I
Sbjct: 325 WQCISSPSCHPHILSICSCSTTFCSKCSAFI 355
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.323 0.137 0.466
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,857,754
Number of Sequences: 27539
Number of extensions: 149515
Number of successful extensions: 528
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 508
Number of HSP's gapped (non-prelim): 23
length of query: 153
length of database: 12,573,161
effective HSP length: 75
effective length of query: 78
effective length of database: 10,507,736
effective search space: 819603408
effective search space used: 819603408
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)
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