Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000883-TA|BGIBMGA000883-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor
(153 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat... 33 0.064
At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT... 29 1.0
At3g19570.2 68416.m02482 expressed protein contains Pfam domain,... 29 1.0
At3g19570.1 68416.m02481 expressed protein contains Pfam domain,... 29 1.0
At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putat... 29 1.8
At5g42290.1 68418.m05147 transcription activator-related contain... 28 2.4
At1g55550.1 68414.m06358 kinesin motor protein-related Similar t... 28 2.4
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 28 2.4
At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family... 28 3.2
At4g31250.1 68417.m04436 leucine-rich repeat transmembrane prote... 28 3.2
At3g44160.1 68416.m04734 chloroplast outer membrane protein-rela... 28 3.2
At4g01350.1 68417.m00175 DC1 domain-containing protein contains ... 27 4.2
At1g66630.1 68414.m07571 seven in absentia (SINA) family protein... 27 4.2
At5g59270.1 68418.m07427 lectin protein kinase family protein co... 27 7.3
At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger) fa... 27 7.3
At3g46260.1 68416.m05007 protein kinase-related contains low sim... 27 7.3
At3g43430.1 68416.m04597 zinc finger (C3HC4-type RING finger) fa... 27 7.3
At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL... 27 7.3
At5g13190.1 68418.m01510 expressed protein 26 9.7
At4g11610.1 68417.m01859 C2 domain-containing protein contains I... 26 9.7
>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 366
Score = 33.5 bits (73), Expect = 0.064
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 130 CTNSCQNAEHYCPNCSAYIGNYSS 153
C++ C N + CP CS IGNY S
Sbjct: 77 CSSCCTNVSNKCPYCSLAIGNYRS 100
>At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3
(KNAT3) identical to homeobox protein knotted-1 like 3
(KNAT3) SP:P48000 from [Arabidopsis thaliana]
Length = 431
Score = 29.5 bits (63), Expect = 1.0
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 35 DLSGTHFVPPHQNPPPYVTQPQP 57
DLS HF HQ PPP P P
Sbjct: 11 DLSFNHFTDQHQPPPPQPPPPPP 33
>At3g19570.2 68416.m02482 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/61 (26%), Positives = 22/61 (36%)
Query: 46 QNPPPYVTQPQPGIXXXXXXXXXXXXXXXXXXXRQMGPDPSHYTCPSCNTAIVTRVERVS 105
+NPPP Q +P + R + P PSH T + TA T S
Sbjct: 17 KNPPPRDRQDKPQLTANNGGLQRRPRAAKNVPSRYLSPSPSHSTTTTTTTATSTSTSSSS 76
Query: 106 T 106
+
Sbjct: 77 S 77
>At3g19570.1 68416.m02481 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 627
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/61 (26%), Positives = 22/61 (36%)
Query: 46 QNPPPYVTQPQPGIXXXXXXXXXXXXXXXXXXXRQMGPDPSHYTCPSCNTAIVTRVERVS 105
+NPPP Q +P + R + P PSH T + TA T S
Sbjct: 17 KNPPPRDRQDKPQLTANNGGLQRRPRAAKNVPSRYLSPSPSHSTTTTTTTATSTSTSSSS 76
Query: 106 T 106
+
Sbjct: 77 S 77
>At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 313
Score = 28.7 bits (61), Expect = 1.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 130 CTNSCQNAEHYCPNCSAYIGNYSS 153
C++ C + CP+C+ IGN+ S
Sbjct: 65 CSSCCTKLRNKCPSCALPIGNFRS 88
>At5g42290.1 68418.m05147 transcription activator-related contains
weak similarity to beta-cell E-box transcription
activator 1 gi|529197|gb|AAA65702
Length = 110
Score = 28.3 bits (60), Expect = 2.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 44 PHQNPPPYVTQPQP 57
PHQ+ PPY++Q QP
Sbjct: 18 PHQHQPPYISQMQP 31
>At1g55550.1 68414.m06358 kinesin motor protein-related Similar to
Kinesin proteins; Contains kinesin motor domain protein
motif and kinesin heavy chain signature motif
Length = 887
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 2 KSIKSVLGALVFNRFEGLPLTQGTNFTIFLDKADLSGTHFV 42
K + +G F+R +Q N + LDK L THF+
Sbjct: 620 KDVMQKIGGTEFSRINSWLRSQSENRSYVLDKTQLPATHFL 660
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 37 SGTHFVPPHQN--PPPYVTQPQP 57
S ++ +PPHQ+ PPPY P P
Sbjct: 381 SSSYMMPPHQSYPPPPYGYMPSP 403
>At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 205
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 40 HFVPPHQNPPPYVTQPQP 57
HF PPHQ PP P P
Sbjct: 48 HFSPPHQPPPSPYPHPHP 65
>At4g31250.1 68417.m04436 leucine-rich repeat transmembrane protein
kinase, putative receptor kinase, Petunia inflata,
Patchx:G498278
Length = 676
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 14 NRFEG-LPLTQGT-NFTIFLDKADLSGTHFVPPHQNPPPYVT 53
N+ EG +PLT G N T F L G +P PP+ T
Sbjct: 204 NQLEGRIPLTLGLMNITFFSGNKGLCGAPLLPCRYTRPPFFT 245
>At3g44160.1 68416.m04734 chloroplast outer membrane protein-related
low similarity to chloroplastic outer envelope membrane
protein (OEP75) [Pisum sativum] GI:633607
Length = 362
Score = 27.9 bits (59), Expect = 3.2
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 3 SIKSVLGALVFNRFEGLPLTQGTNFTIFLD-KADLSGTHFVPPHQNPPPYVTQPQPG 58
++ S LV N LPL + T TIFLD DL + VP + P + Q +PG
Sbjct: 267 AVGSGRSCLVANTELALPLNKMTEGTIFLDCGTDLGSSRLVPGN----PSMRQGKPG 319
>At4g01350.1 68417.m00175 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 27.5 bits (58), Expect = 4.2
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 123 PCVCIPYCTNSCQNAEHYCPNC 144
PC+C C C+ A + CP C
Sbjct: 249 PCIC-DICGKKCEFAVYVCPQC 269
>At1g66630.1 68414.m07571 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 303
Score = 27.5 bits (58), Expect = 4.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 130 CTNSCQNAEHYCPNCSAYIGNYSS 153
C++ C+ ++ CP CS IG + S
Sbjct: 70 CSSCCKKVKYKCPYCSLRIGFFRS 93
>At5g59270.1 68418.m07427 lectin protein kinase family protein
contains Pfam domains PF00139: Legume lectins beta
domain and PF00069: Protein kinase domain
Length = 668
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 26 NFTIFLDKADLSGTHFVPPHQNPPPYVTQPQP 57
N T+F++ DLS PP++ PPP P P
Sbjct: 246 NGTMFVESLDLSKI-LDPPNRPPPPSSPPPPP 276
>At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 508
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 117 CLIGCW-PC-VCIPY-CTNSCQNAEH-YCPNCSAYIGNYS 152
CL C PC VC+ CT + H +C NC+ Y+ S
Sbjct: 313 CLTPCRDPCAVCLERKCTVAADGCAHEFCTNCALYLSTTS 352
>At3g46260.1 68416.m05007 protein kinase-related contains low
similarity to light repressible receptor protein kinase
[Arabidopsis thaliana] gi|1321686|emb|CAA66376
Length = 434
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 10 ALVFNRFEGLPLTQGTNFTIFLDKADLSGTHFVPP 44
AL F+ + L TQ +FT+FLD + G+H + P
Sbjct: 278 ALYFSEPQSLGRTQKRSFTVFLDGMQV-GSHPIVP 311
>At3g43430.1 68416.m04597 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 167
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 82 GPDPSHYTCPSCNTAIVTRVERVSTTKTHLFAA--LLCLIG 120
G D +H TCP C T ++ ST +A LL L G
Sbjct: 122 GDDDNHRTCPLCRTPLLPSFTDYSTVTQTSWAVERLLYLFG 162
>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
(PLDBETA1) identical to SP|P93733 Phospholipase D beta
1 (EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
{Arabidopsis thaliana}; contains Pfam profiles: PF00614
phospholipase D.active site motif, PF00168 C2 domain
Length = 1083
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 43 PPHQNPPPYVTQPQP 57
PP+ PPPY + P P
Sbjct: 51 PPYATPPPYASPPPP 65
>At5g13190.1 68418.m01510 expressed protein
Length = 134
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 85 PSHYTCPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCTNSCQ-NAEHYCPN 143
P+ + C C +T + +K + A + C++ C + C N +H+CP
Sbjct: 48 PAPFNCLYCGNTGLTNLR----SKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQ 103
Query: 144 CSAYIGNY 151
C + ++
Sbjct: 104 CGNKVADF 111
>At4g11610.1 68417.m01859 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1011
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 23 QGTNFTIFLDKADLSGTHFVP 43
+ TN FL K LSGT FVP
Sbjct: 81 RSTNGRSFLGKVSLSGTSFVP 101
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.323 0.137 0.466
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,533,732
Number of Sequences: 28952
Number of extensions: 130272
Number of successful extensions: 662
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 24
length of query: 153
length of database: 12,070,560
effective HSP length: 75
effective length of query: 78
effective length of database: 9,899,160
effective search space: 772134480
effective search space used: 772134480
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)
- SilkBase 1999-2023 -