GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000882-TA|BGIBMGA000882-PA|IPR001684|Ribosomal protein
L27
         (134 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit L27...    58   5e-10
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   3.0  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   5.3  

>SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 58.0 bits (134), Expect = 5e-10
 Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 5   KLKHIILVELVRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHP 64
           K  +I+    +R ++K  GGS++NT      +  G K  +  FV+AG +L  QR T+FHP
Sbjct: 24  KASNILTFPPIRTSTKHGGGSSKNTGDSAG-RRLGIKRSENQFVRAGEILIRQRGTKFHP 82

Query: 65  GLNVGFGVNGTLFAMEAGKV 84
           G N G G + T++++ +G V
Sbjct: 83  GDNTGLGKDHTIYSLVSGYV 102


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 12/88 (13%)

Query: 33  VKPKHRGWKVQDG---HFVQ-AGHMLATQRT--TRFHPGLNVGFGVNGTLFAMEAGKVVV 86
           VK KH+ W +  G   H  +   H +   +   T F PGL   + V      +  G    
Sbjct: 489 VKLKHKYWHLSSGFHLHITRFEAHDMGKVKDIDTDFEPGLQC-YQVGSDTSVLRYG---- 543

Query: 87  TCEKFDPNWDHTWVQRMYKGRYDQTIYK 114
               +DP WD+      +K ++    YK
Sbjct: 544 -LSFWDPKWDYLLADNQHKQQWQAPSYK 570


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 71  GVNGTLFAMEAG-KVVVTCEKFDPNWDHTWVQRMYKGRYDQTIYKQYYNVIPEPQHQRFK 129
           GV G+   M  G   +VT   FD N       R Y G  D TI+    N +       FK
Sbjct: 76  GVPGSHEIMFPGHSKIVTTTTFDKNGS-----RFYTGSLDNTIHCWDLNGLSATNPHPFK 130

Query: 130 LID 132
           +ID
Sbjct: 131 IID 133


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 640,167
Number of Sequences: 5004
Number of extensions: 23599
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 3
length of query: 134
length of database: 2,362,478
effective HSP length: 66
effective length of query: 68
effective length of database: 2,032,214
effective search space: 138190552
effective search space used: 138190552
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)