GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000882-TA|BGIBMGA000882-PA|IPR001684|Ribosomal protein
L27
         (134 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0356 + 14847677-14847755,14847850-14847971,14848197-14848433     59   1e-09
08_02_0609 + 19302665-19302743,19302857-19302978,19303205-19303441     59   1e-09
08_02_0608 + 19297510-19297588,19297702-19297823,19298050-19298286     59   1e-09
01_07_0012 + 40446271-40446609,40447378-40447479,40447565-40447741     35   0.019
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554...    27   3.8  

>04_03_0356 + 14847677-14847755,14847850-14847971,14848197-14848433
          Length = 145

 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 16  RNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGT 75
           R A+KKT GST+N      PK+ G K   G  V+ G+++  QR TRFHPG  VG G + T
Sbjct: 38  RWATKKTAGSTKNGRDS-NPKYLGVKKFGGEKVEPGNIIVRQRGTRFHPGNYVGMGKDHT 96

Query: 76  LFAMEAGKV 84
           LF ++ G V
Sbjct: 97  LFCLKEGHV 105


>08_02_0609 + 19302665-19302743,19302857-19302978,19303205-19303441
          Length = 145

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 16  RNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGT 75
           R A+KKT GST+N      PK+ G K   G  V+ G+++  QR TRFHPG  VG G + T
Sbjct: 38  RWATKKTAGSTKNGRDS-NPKYLGVKKFGGEKVEPGNIIIRQRGTRFHPGNYVGMGKDHT 96

Query: 76  LFAMEAGKV 84
           LF ++ G V
Sbjct: 97  LFCLKEGHV 105


>08_02_0608 + 19297510-19297588,19297702-19297823,19298050-19298286
          Length = 145

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 16  RNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGT 75
           R A+KKT GST+N      PK+ G K   G  V+ G+++  QR TRFHPG  VG G + T
Sbjct: 38  RWATKKTAGSTKNGRDS-NPKYLGVKKFGGEKVEPGNIIIRQRGTRFHPGNYVGMGKDHT 96

Query: 76  LFAMEAGKV 84
           LF ++ G V
Sbjct: 97  LFCLKEGHV 105


>01_07_0012 + 40446271-40446609,40447378-40447479,40447565-40447741
          Length = 205

 Score = 35.1 bits (77), Expect = 0.019
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 15/91 (16%)

Query: 15  VRNASKKTGGSTQNTNCKVKPKHR-GWKVQDGHFVQAGHMLATQRTTRF----------H 63
           ++ A KK  GST+N   +  P  R G K+      + G ++  QR TR           +
Sbjct: 58  IQMAHKKGAGSTKNG--RDSPGQRLGVKIYGDQVAKPGAIIIRQRGTRVITILFLYLLVY 115

Query: 64  PGLNVGFGVNGTLFAMEAGKVVVTCEKFDPN 94
           PG NVG G + TLF++  G  +V  EK+ P+
Sbjct: 116 PGNNVGMGKDHTLFSLIDG--LVKFEKYGPD 144


>05_06_0014 +
           24854462-24854570,24854958-24855065,24855240-24855432,
           24855892-24856150,24856236-24856292,24856370-24856417,
           24856725-24856811,24856885-24856942,24857084-24857151,
           24857279-24857374,24857483-24857539,24857906-24857952,
           24858184-24858210,24858312-24858504
          Length = 468

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 58  RTTRFHPGLNVGFGVNGTLFAMEAGKVVVTCEKFDPNWDHTWVQRMYK 105
           R  R   GL  G  V  +L  + +G+V+   E+FD +W   WV+  +K
Sbjct: 3   RLRRGGVGLLRGAVVLASLLLVVSGEVIFE-ERFDDDWGSRWVKSDWK 49


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.137    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,154,115
Number of Sequences: 37544
Number of extensions: 155649
Number of successful extensions: 234
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 5
length of query: 134
length of database: 14,793,348
effective HSP length: 75
effective length of query: 59
effective length of database: 11,977,548
effective search space: 706675332
effective search space used: 706675332
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)