BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000882-TA|BGIBMGA000882-PA|IPR001684|Ribosomal protein L27 (134 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_03_0356 + 14847677-14847755,14847850-14847971,14848197-14848433 59 1e-09 08_02_0609 + 19302665-19302743,19302857-19302978,19303205-19303441 59 1e-09 08_02_0608 + 19297510-19297588,19297702-19297823,19298050-19298286 59 1e-09 01_07_0012 + 40446271-40446609,40447378-40447479,40447565-40447741 35 0.019 05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 27 3.8 >04_03_0356 + 14847677-14847755,14847850-14847971,14848197-14848433 Length = 145 Score = 59.3 bits (137), Expect = 1e-09 Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 16 RNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGT 75 R A+KKT GST+N PK+ G K G V+ G+++ QR TRFHPG VG G + T Sbjct: 38 RWATKKTAGSTKNGRDS-NPKYLGVKKFGGEKVEPGNIIVRQRGTRFHPGNYVGMGKDHT 96 Query: 76 LFAMEAGKV 84 LF ++ G V Sbjct: 97 LFCLKEGHV 105 >08_02_0609 + 19302665-19302743,19302857-19302978,19303205-19303441 Length = 145 Score = 58.8 bits (136), Expect = 1e-09 Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 16 RNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGT 75 R A+KKT GST+N PK+ G K G V+ G+++ QR TRFHPG VG G + T Sbjct: 38 RWATKKTAGSTKNGRDS-NPKYLGVKKFGGEKVEPGNIIIRQRGTRFHPGNYVGMGKDHT 96 Query: 76 LFAMEAGKV 84 LF ++ G V Sbjct: 97 LFCLKEGHV 105 >08_02_0608 + 19297510-19297588,19297702-19297823,19298050-19298286 Length = 145 Score = 58.8 bits (136), Expect = 1e-09 Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 16 RNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGT 75 R A+KKT GST+N PK+ G K G V+ G+++ QR TRFHPG VG G + T Sbjct: 38 RWATKKTAGSTKNGRDS-NPKYLGVKKFGGEKVEPGNIIIRQRGTRFHPGNYVGMGKDHT 96 Query: 76 LFAMEAGKV 84 LF ++ G V Sbjct: 97 LFCLKEGHV 105 >01_07_0012 + 40446271-40446609,40447378-40447479,40447565-40447741 Length = 205 Score = 35.1 bits (77), Expect = 0.019 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 15/91 (16%) Query: 15 VRNASKKTGGSTQNTNCKVKPKHR-GWKVQDGHFVQAGHMLATQRTTRF----------H 63 ++ A KK GST+N + P R G K+ + G ++ QR TR + Sbjct: 58 IQMAHKKGAGSTKNG--RDSPGQRLGVKIYGDQVAKPGAIIIRQRGTRVITILFLYLLVY 115 Query: 64 PGLNVGFGVNGTLFAMEAGKVVVTCEKFDPN 94 PG NVG G + TLF++ G +V EK+ P+ Sbjct: 116 PGNNVGMGKDHTLFSLIDG--LVKFEKYGPD 144 >05_06_0014 + 24854462-24854570,24854958-24855065,24855240-24855432, 24855892-24856150,24856236-24856292,24856370-24856417, 24856725-24856811,24856885-24856942,24857084-24857151, 24857279-24857374,24857483-24857539,24857906-24857952, 24858184-24858210,24858312-24858504 Length = 468 Score = 27.5 bits (58), Expect = 3.8 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 58 RTTRFHPGLNVGFGVNGTLFAMEAGKVVVTCEKFDPNWDHTWVQRMYK 105 R R GL G V +L + +G+V+ E+FD +W WV+ +K Sbjct: 3 RLRRGGVGLLRGAVVLASLLLVVSGEVIFE-ERFDDDWGSRWVKSDWK 49 Database: rice Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.322 0.137 0.437 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 4,154,115 Number of Sequences: 37544 Number of extensions: 155649 Number of successful extensions: 234 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 228 Number of HSP's gapped (non-prelim): 5 length of query: 134 length of database: 14,793,348 effective HSP length: 75 effective length of query: 59 effective length of database: 11,977,548 effective search space: 706675332 effective search space used: 706675332 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.9 bits) S2: 55 (26.2 bits)
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