GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000882-TA|BGIBMGA000882-PA|IPR001684|Ribosomal protein
L27
         (134 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   9e-07
SB_38608| Best HMM Match : Peptidase_C2 (HMM E-Value=0)                29   1.3  
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_40708| Best HMM Match : SRCR (HMM E-Value=0)                        27   5.2  
SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05)                 26   9.1  

>SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 49.6 bits (113), Expect = 9e-07
 Identities = 25/62 (40%), Positives = 34/62 (54%)

Query: 7  KHIILVELVRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGL 66
          K +  V   RNASKK  GST+N     K KH G K ++G  V    +L   R  ++HPG+
Sbjct: 21 KALSSVNCARNASKKAAGSTKNQGKNKKGKHLGIKRREGEDVIPATILVRHRGYKYHPGV 80

Query: 67 NV 68
          N+
Sbjct: 81 NI 82


>SB_38608| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
          Length = 842

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 77  FAMEAGKVVVTCEKFDPNWDHTWVQRMYKGRYDQTIYKQYYNVIPEPQHQR 127
           +A+  G+ VV    F+PN +  +V RMY  +  +T           PQHQR
Sbjct: 638 YALPPGEYVVIPTTFNPNEEGNFVLRMYSEKAHKTCEVDEKTEF-APQHQR 687


>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 51  GHMLATQRTTRFHPGLNVGFGVNGTLFAMEAGKVVVTCEKFDP 93
           G+++A  + T   PG NV FG++ ++  + +    +T   F+P
Sbjct: 327 GNVIAANQNTSIFPGQNVHFGISSSVHKLAS---EITAGHFNP 366


>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1976

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 24   GSTQNTNCKVKPKHRGWKVQD-GHFVQAGHMLATQRTTRFHPGLNVGFGVNGTLFAMEAG 82
            G  +N N   K KHRGW +++  H   AG   A   T++    +N G G      A   G
Sbjct: 1084 GHLRNENTLSKCKHRGWGIENCEHSEDAGVTCAGPDTSQ-DCIMNCGPGFYKNESARTCG 1142

Query: 83   KVVVTCE 89
            K    C+
Sbjct: 1143 KCSSDCK 1149


>SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05)
          Length = 365

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 11  LVELVRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAG 51
           L ELV  + ++TGGST  +  K   K    +V+D +  ++G
Sbjct: 304 LEELVAWSKRQTGGSTSTSEVKNSKKTSNEQVKDRNDKESG 344


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.137    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,791,273
Number of Sequences: 59808
Number of extensions: 180700
Number of successful extensions: 248
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 5
length of query: 134
length of database: 16,821,457
effective HSP length: 75
effective length of query: 59
effective length of database: 12,335,857
effective search space: 727815563
effective search space used: 727815563
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)