Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000882-TA|BGIBMGA000882-PA|IPR001684|Ribosomal protein
L27
(134 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC021986-1|AAH21986.1| 148|Homo sapiens mitochondrial ribosomal... 88 1e-17
BC001066-1|AAH01066.1| 148|Homo sapiens mitochondrial ribosomal... 88 1e-17
AB049647-1|BAB40852.1| 148|Homo sapiens mitochondrial ribosomal... 88 1e-17
D14838-1|BAA03572.1| 208|Homo sapiens fibroblast growth factor ... 28 8.9
BX682239-1|CAI43189.1| 115|Homo sapiens fibroblast growth facto... 28 8.9
BC103979-1|AAI03980.1| 208|Homo sapiens fibroblast growth facto... 28 8.9
BC103978-1|AAI03979.1| 208|Homo sapiens fibroblast growth facto... 28 8.9
BC069692-1|AAH69692.1| 208|Homo sapiens fibroblast growth facto... 28 8.9
AY682094-1|AAT74624.1| 208|Homo sapiens fibroblast growth facto... 28 8.9
AL139378-2|CAC17692.1| 208|Homo sapiens fibroblast growth facto... 28 8.9
AB009391-1|BAA24956.1| 207|Homo sapiens FGF-16 protein. 28 8.9
>BC021986-1|AAH21986.1| 148|Homo sapiens mitochondrial ribosomal
protein L27 protein.
Length = 148
Score = 87.8 bits (208), Expect = 1e-17
Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 7/121 (5%)
Query: 15 VRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNG 74
VR ASKK+GGS++N K + +G K +GH+V AG+++ATQR R+HPG +VG G N
Sbjct: 28 VRYASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNK 87
Query: 75 TLFAMEAGKVVVTCEKFDPNWDHT----WVQRMYKGRYDQTIYKQYYNVIPEPQHQRFKL 130
L+A+E G V T E + P+ +T + R+ KG +YK + +V+P FKL
Sbjct: 88 CLYALEEGIVRYTKEVYVPHPRNTEAVDLITRLPKG---AVLYKTFVHVVPAKPEGTFKL 144
Query: 131 I 131
+
Sbjct: 145 V 145
>BC001066-1|AAH01066.1| 148|Homo sapiens mitochondrial ribosomal
protein L27 protein.
Length = 148
Score = 87.8 bits (208), Expect = 1e-17
Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 7/121 (5%)
Query: 15 VRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNG 74
VR ASKK+GGS++N K + +G K +GH+V AG+++ATQR R+HPG +VG G N
Sbjct: 28 VRYASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNK 87
Query: 75 TLFAMEAGKVVVTCEKFDPNWDHT----WVQRMYKGRYDQTIYKQYYNVIPEPQHQRFKL 130
L+A+E G V T E + P+ +T + R+ KG +YK + +V+P FKL
Sbjct: 88 CLYALEEGIVRYTKEVYVPHPRNTEAVDLITRLPKG---AVLYKTFVHVVPAKPEGTFKL 144
Query: 131 I 131
+
Sbjct: 145 V 145
>AB049647-1|BAB40852.1| 148|Homo sapiens mitochondrial ribosomal
protein L27 (L27mt) protein.
Length = 148
Score = 87.8 bits (208), Expect = 1e-17
Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 7/121 (5%)
Query: 15 VRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNG 74
VR ASKK+GGS++N K + +G K +GH+V AG+++ATQR R+HPG +VG G N
Sbjct: 28 VRYASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNK 87
Query: 75 TLFAMEAGKVVVTCEKFDPNWDHT----WVQRMYKGRYDQTIYKQYYNVIPEPQHQRFKL 130
L+A+E G V T E + P+ +T + R+ KG +YK + +V+P FKL
Sbjct: 88 CLYALEEGIVRYTKEVYVPHPRNTEAVDLITRLPKG---AVLYKTFVHVVPAKPEGTFKL 144
Query: 131 I 131
+
Sbjct: 145 V 145
>D14838-1|BAA03572.1| 208|Homo sapiens fibroblast growth factor 9
protein.
Length = 208
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 65 GLNVGFGVNGTLFAMEAGKVVVTC---EKFDPNWDHTWVQRMYK 105
GL +G G L+ E K+ C E+F+ NW +T+ +YK
Sbjct: 113 GLYLGMNEKGELYGSE--KLTQECVFREQFEENWYNTYSSNLYK 154
>BX682239-1|CAI43189.1| 115|Homo sapiens fibroblast growth factor
16 protein.
Length = 115
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 65 GLNVGFGVNGTLF-AMEAGKVVVTCEKFDPNWDHTWVQRMYKGRYDQTIYKQYY 117
GL +G G L+ + + + V E+F+ NW +T+ +YK + +QYY
Sbjct: 20 GLYLGMNERGELYGSKKLTRECVFREQFEENWYNTYASTLYKHSDSE---RQYY 70
>BC103979-1|AAI03980.1| 208|Homo sapiens fibroblast growth factor 9
(glia-activating factor) protein.
Length = 208
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 65 GLNVGFGVNGTLFAMEAGKVVVTC---EKFDPNWDHTWVQRMYK 105
GL +G G L+ E K+ C E+F+ NW +T+ +YK
Sbjct: 113 GLYLGMNEKGELYGSE--KLTQECVFREQFEENWYNTYSSNLYK 154
>BC103978-1|AAI03979.1| 208|Homo sapiens fibroblast growth factor 9
(glia-activating factor) protein.
Length = 208
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 65 GLNVGFGVNGTLFAMEAGKVVVTC---EKFDPNWDHTWVQRMYK 105
GL +G G L+ E K+ C E+F+ NW +T+ +YK
Sbjct: 113 GLYLGMNEKGELYGSE--KLTQECVFREQFEENWYNTYSSNLYK 154
>BC069692-1|AAH69692.1| 208|Homo sapiens fibroblast growth factor
9, precursor protein.
Length = 208
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 65 GLNVGFGVNGTLFAMEAGKVVVTC---EKFDPNWDHTWVQRMYK 105
GL +G G L+ E K+ C E+F+ NW +T+ +YK
Sbjct: 113 GLYLGMNEKGELYGSE--KLTQECVFREQFEENWYNTYSSNLYK 154
>AY682094-1|AAT74624.1| 208|Homo sapiens fibroblast growth factor 9
(glia-activating factor) protein.
Length = 208
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 65 GLNVGFGVNGTLFAMEAGKVVVTC---EKFDPNWDHTWVQRMYK 105
GL +G G L+ E K+ C E+F+ NW +T+ +YK
Sbjct: 113 GLYLGMNEKGELYGSE--KLTQECVFREQFEENWYNTYSSNLYK 154
>AL139378-2|CAC17692.1| 208|Homo sapiens fibroblast growth factor 9
(glia-activating factor) protein.
Length = 208
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 65 GLNVGFGVNGTLFAMEAGKVVVTC---EKFDPNWDHTWVQRMYK 105
GL +G G L+ E K+ C E+F+ NW +T+ +YK
Sbjct: 113 GLYLGMNEKGELYGSE--KLTQECVFREQFEENWYNTYSSNLYK 154
>AB009391-1|BAA24956.1| 207|Homo sapiens FGF-16 protein.
Length = 207
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 65 GLNVGFGVNGTLF-AMEAGKVVVTCEKFDPNWDHTWVQRMYKGRYDQTIYKQYY 117
GL +G G L+ + + + V E+F+ NW +T+ +YK + +QYY
Sbjct: 112 GLYLGMNERGELYGSKKLTRECVFREQFEENWYNTYASTLYKHSDSE---RQYY 162
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.322 0.137 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,782,182
Number of Sequences: 224733
Number of extensions: 785121
Number of successful extensions: 1199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 11
length of query: 134
length of database: 73,234,838
effective HSP length: 82
effective length of query: 52
effective length of database: 54,806,732
effective search space: 2849950064
effective search space used: 2849950064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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