GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000882-TA|BGIBMGA000882-PA|IPR001684|Ribosomal protein
L27
         (134 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-747|AAO41158.1|  138|Drosophila melanogaster CG33002-PA...   202   1e-52
BT022353-1|AAY54769.1|  101|Drosophila melanogaster IP05023p pro...   110   5e-25

>AE014134-747|AAO41158.1|  138|Drosophila melanogaster CG33002-PA
           protein.
          Length = 138

 Score =  202 bits (493), Expect = 1e-52
 Identities = 87/124 (70%), Positives = 101/124 (81%)

Query: 11  LVELVRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGF 70
           L+  VRNASKKTGGST+N     +PKHRGW+VQDGH V  G +LATQ TTRFHPGLNVGF
Sbjct: 15  LMTTVRNASKKTGGSTRNKKGHARPKHRGWRVQDGHHVSEGTILATQLTTRFHPGLNVGF 74

Query: 71  GVNGTLFAMEAGKVVVTCEKFDPNWDHTWVQRMYKGRYDQTIYKQYYNVIPEPQHQRFKL 130
           G NGTLFAME GKV VTCE  DPNWDHTW+QR Y GR  Q IYK+++NV+PE QHQRF+L
Sbjct: 75  GRNGTLFAMEHGKVYVTCEAIDPNWDHTWIQRNYAGRQGQNIYKKFFNVVPENQHQRFRL 134

Query: 131 IDEV 134
           ++E+
Sbjct: 135 VEEI 138


>BT022353-1|AAY54769.1|  101|Drosophila melanogaster IP05023p
          protein.
          Length = 101

 Score =  110 bits (265), Expect = 5e-25
 Identities = 50/73 (68%), Positives = 56/73 (76%)

Query: 11 LVELVRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGF 70
          L+  VRNASKKTGGST+N     +PKHRGW+VQDGH V  G +LATQ TTRFHPGLNVGF
Sbjct: 27 LMTTVRNASKKTGGSTRNKKGHARPKHRGWRVQDGHHVSEGTILATQLTTRFHPGLNVGF 86

Query: 71 GVNGTLFAMEAGK 83
          G NGTLFA    +
Sbjct: 87 GRNGTLFAWSTAR 99


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.322    0.137    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,131,084
Number of Sequences: 52641
Number of extensions: 271515
Number of successful extensions: 374
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 2
length of query: 134
length of database: 24,830,863
effective HSP length: 77
effective length of query: 57
effective length of database: 20,777,506
effective search space: 1184317842
effective search space used: 1184317842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)