GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000882-TA|BGIBMGA000882-PA|IPR001684|Ribosomal protein
L27
         (134 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U78092-1|AAB36684.1|  297|Caenorhabditis elegans LIN-7 protein.        37   0.004
AL034488-10|CAA22459.2|  316|Caenorhabditis elegans Hypothetical...    37   0.004
AL032632-3|CAA21583.1|  199|Caenorhabditis elegans Hypothetical ...    28   2.6  
AJ011523-1|CAB38019.1|  760|Caenorhabditis elegans CHE-2 protein...    27   4.5  
AC006635-2|AAK68383.1|  760|Caenorhabditis elegans Abnormal chem...    27   4.5  
AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical ...    27   6.0  
U67954-7|AAP40534.1|  119|Caenorhabditis elegans Wrapper/rega-1/...    26   7.9  
L08403-3|AAT92076.1|  335|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>U78092-1|AAB36684.1|  297|Caenorhabditis elegans LIN-7 protein.
          Length = 297

 Score = 37.1 bits (82), Expect = 0.004
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 38  RGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGTLFAMEA---GKVVVTCEKFDPN 94
           RG   +DG  V+   +L  Q    +HPGLNV +  +     + A   G V ++ EK DP+
Sbjct: 26  RGIFRKDGEVVRKDDLLVNQFKMNYHPGLNVYYENDRGERLLRAHCDGIVRISQEKCDPD 85

Query: 95  WDHTWVQRMYKGRYDQTIYKQYYNV 119
           ++     + Y+ R D  +YK  +N+
Sbjct: 86  YE-IEEMKGYEYRKDVDLYKMTFNM 109


>AL034488-10|CAA22459.2|  316|Caenorhabditis elegans Hypothetical
           protein Y54G11A.10 protein.
          Length = 316

 Score = 37.1 bits (82), Expect = 0.004
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 38  RGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGTLFAMEA---GKVVVTCEKFDPN 94
           RG   +DG  V+   +L  Q    +HPGLNV +  +     + A   G V ++ EK DP+
Sbjct: 26  RGIFRKDGEVVRKDDLLVNQFKMNYHPGLNVYYENDRGERLLRAHCDGIVRISQEKCDPD 85

Query: 95  WDHTWVQRMYKGRYDQTIYKQYYNV 119
           ++     + Y+ R D  +YK  +N+
Sbjct: 86  YE-IEEMKGYEYRKDVDLYKMTFNM 109


>AL032632-3|CAA21583.1|  199|Caenorhabditis elegans Hypothetical
           protein Y11D7A.7 protein.
          Length = 199

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 17  NASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGH---MLATQRTTRFH 63
           N+S + G S+   N +    H  +K         GH   +L TQ+ + FH
Sbjct: 132 NSSSRDGSSSSIANSRSNDNHESFKSSKNKSTTLGHASFLLKTQKLSSFH 181


>AJ011523-1|CAB38019.1|  760|Caenorhabditis elegans CHE-2 protein
           protein.
          Length = 760

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 63  HPGLNVGFGVNGTLFAMEAGKVVVTCEKFDPNWDHTWVQRMYKG 106
           +P  ++ +  +GTLFA+ +  ++  C+K    W H+ +++M  G
Sbjct: 228 YPITSISWNTDGTLFAVGSHNILRLCDK--SGWSHS-LEKMNAG 268


>AC006635-2|AAK68383.1|  760|Caenorhabditis elegans Abnormal
           chemotaxis protein 2 protein.
          Length = 760

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 63  HPGLNVGFGVNGTLFAMEAGKVVVTCEKFDPNWDHTWVQRMYKG 106
           +P  ++ +  +GTLFA+ +  ++  C+K    W H+ +++M  G
Sbjct: 228 YPITSISWNTDGTLFAVGSHNILRLCDK--SGWSHS-LEKMNAG 268


>AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical
           protein K10B4.1 protein.
          Length = 1210

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/50 (20%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 75  TLFAMEAGKVVVTCEKFDPNWD----HTWVQRMYKGRYDQTIYKQYYNVI 120
           ++F  E  ++  T ++ +PNWD    +   +++    +   +Y +Y  +I
Sbjct: 895 SVFHREHERITTTLKEINPNWDDEKIYQETRKLISAEFAHIVYNEYLPII 944


>U67954-7|AAP40534.1|  119|Caenorhabditis elegans
           Wrapper/rega-1/klingon homologprotein 1, isoform d
           protein.
          Length = 119

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 74  GTLFAMEAGKVVVTCEKFDPNWDHTWVQRMYKGRYDQTIYKQY--YNVIPEPQHQRFKL 130
           GTL A E   + + CE  DP+    W +       D  I   Y  Y +  E    RF L
Sbjct: 25  GTLIAKEGESLTLRCEVEDPSVAIIWRKNTEVVAVDDEILDTYGGYEISMEGSVTRFNL 83


>L08403-3|AAT92076.1|  335|Caenorhabditis elegans Hypothetical
           protein F42H10.3 protein.
          Length = 335

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 82  GKVVVTCEKFDPNWDHTWVQR 102
           G ++V CEK D  W    VQR
Sbjct: 290 GDIIVNCEKIDDGWMTGTVQR 310


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.137    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,552,135
Number of Sequences: 27539
Number of extensions: 135666
Number of successful extensions: 286
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 8
length of query: 134
length of database: 12,573,161
effective HSP length: 74
effective length of query: 60
effective length of database: 10,535,275
effective search space: 632116500
effective search space used: 632116500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)