GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000882-TA|BGIBMGA000882-PA|IPR001684|Ribosomal protein
L27
         (134 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   2.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   4.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 1   MFRTKLKHIILVELVRNASKKTGGSTQN 28
           M RT LK   +V   ++ S+K GG   N
Sbjct: 166 MNRTSLKTSKIVSYPKSRSRKKGGLKDN 193


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 104 YKGRYDQTIYKQYYNVI 120
           Y   Y+    K YYN+I
Sbjct: 343 YNNNYNNNCKKLYYNII 359


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,476
Number of Sequences: 429
Number of extensions: 1654
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 134
length of database: 140,377
effective HSP length: 52
effective length of query: 82
effective length of database: 118,069
effective search space:  9681658
effective search space used:  9681658
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)