GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000882-TA|BGIBMGA000882-PA|IPR001684|Ribosomal protein
L27
         (134 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16930.2 68415.m01951 ribosomal protein L27 family protein co...    60   7e-10
At2g16930.1 68415.m01950 ribosomal protein L27 family protein co...    60   7e-10
At5g15220.1 68418.m01783 ribosomal protein L27 family protein ri...    59   1e-09
At5g40950.1 68418.m04975 50S ribosomal protein L27, chloroplast,...    50   7e-07
At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to SP|Q...    26   7.5  
At5g35430.1 68418.m04213 expressed protein                             26   9.9  
At4g10600.1 68417.m01734 PHD finger family protein contains Pfam...    26   9.9  
At1g17620.1 68414.m02179 expressed protein                             26   9.9  

>At2g16930.2 68415.m01951 ribosomal protein L27 family protein
           contains Pfam profile PF01016: ribosomal protein L27
          Length = 154

 Score = 59.7 bits (138), Expect = 7e-10
 Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 14  LVRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVN 73
           L R A+KKT GST+N      PK  G K   G  V  G+++  QR TRFHPG  VG G +
Sbjct: 43  LKRWATKKTAGSTKNGRDS-NPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKD 101

Query: 74  GTLFAMEAGKV 84
            TLFA++ G+V
Sbjct: 102 HTLFALKEGRV 112


>At2g16930.1 68415.m01950 ribosomal protein L27 family protein
           contains Pfam profile PF01016: ribosomal protein L27
          Length = 154

 Score = 59.7 bits (138), Expect = 7e-10
 Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 14  LVRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVN 73
           L R A+KKT GST+N      PK  G K   G  V  G+++  QR TRFHPG  VG G +
Sbjct: 43  LKRWATKKTAGSTKNGRDS-NPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKD 101

Query: 74  GTLFAMEAGKV 84
            TLFA++ G+V
Sbjct: 102 HTLFALKEGRV 112


>At5g15220.1 68418.m01783 ribosomal protein L27 family protein
           ribosomal protein L27, Haemophilus influenzae,
           PIR:F64099
          Length = 154

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 16  RNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGT 75
           R A+KKT GST+N      PK  G K   G  V  G+++  QR TRFHPG  VG G + T
Sbjct: 45  RWATKKTAGSTKNGRDS-NPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHT 103

Query: 76  LFAMEAGKV 84
           LFA++ G+V
Sbjct: 104 LFALKEGRV 112


>At5g40950.1 68418.m04975 50S ribosomal protein L27, chloroplast,
           putative (RPL27) identical to SP|Q9FLN4 ribosomal
           protein L27, chloroplast precursor {Arabidopsis
           thaliana}; similar to SP|P30155 50S ribosomal protein
           L27, chloroplast precursor (CL27) {Nicotiana tabacum}
          Length = 198

 Score = 49.6 bits (113), Expect = 7e-07
 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 5/81 (6%)

Query: 15  VRNASKKTGGSTQNTNCKVKPKHR-GWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVN 73
           + +A KK  GST+N   +  P  R G K+      + G ++  QR T+FH G NVG G +
Sbjct: 56  IESAHKKGAGSTKNG--RDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKD 113

Query: 74  GTLFAMEAGKVVVTCEKFDPN 94
            T+F++  G  +V  EKF P+
Sbjct: 114 HTIFSLIDG--LVKFEKFGPD 132


>At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to
           SP|Q38858 Calreticulin 2 precursor {Arabidopsis
           thaliana}
          Length = 424

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 81  AGKVVVTCEKFDPNWDHTWVQRMYK 105
           A   V+  E+FD  W++ WV+  +K
Sbjct: 20  ASAAVIFEERFDDGWENRWVKSEWK 44


>At5g35430.1 68418.m04213 expressed protein
          Length = 786

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 47  FVQAGHMLATQRTTRFHPGLNVGFGVNGTLFAMEAGKVVVTCEKFDPNWDHT 98
           +V  GH+ A +     +  +  G  ++  L   +  K+    E FD  W HT
Sbjct: 632 YVFLGHIYAAEALCLLNRPIEAGAHLSAYLLGQDDFKLPYAQEDFDQWWKHT 683


>At4g10600.1 68417.m01734 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 237

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 82  GKVVVTCEKFDPNWDHTWVQRMYKG 106
           GK +V C++    W HTW  R  KG
Sbjct: 25  GKEMVDCDECGV-WVHTWCSRYVKG 48


>At1g17620.1 68414.m02179 expressed protein
          Length = 264

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 12  VELVRNASKK-TGGSTQNTNCKVKPKHRGWKV 42
           +++V    KK T  +T    CKV P+ + WK+
Sbjct: 231 IKVVAPTGKKATTATTSAAKCKVDPRFKIWKI 262


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.137    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,385,226
Number of Sequences: 28952
Number of extensions: 128963
Number of successful extensions: 215
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 8
length of query: 134
length of database: 12,070,560
effective HSP length: 74
effective length of query: 60
effective length of database: 9,928,112
effective search space: 595686720
effective search space used: 595686720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)