GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000881-TA|BGIBMGA000881-PA|IPR003599|Immunoglobulin
subtype, IPR001254|Peptidase S1 and S6, chymotrypsin/Hap
         (308 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543...    32   0.51 
11_01_0738 - 6218730-6220173,6221969-6223056                           29   3.6  

>04_03_0535 -
           16850704-16853001,16854055-16854115,16854228-16854323,
           16854394-16854521,16855016-16855067,16855182-16855274,
           16855473-16855590,16856456-16856609,16857512-16857643,
           16859136-16859216,16859353-16859507,16860118-16860343,
           16860423-16860507,16860593-16860689,16861785-16861949,
           16862046-16862121,16863041-16863103,16863193-16863359,
           16863495-16863669,16863743-16863835,16864694-16864810,
           16865589-16865778,16866092-16866126
          Length = 1618

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 13/83 (15%)

Query: 145 RLTPLSYCRFEPPK-GRPFNIAEDVTPDNAILGRFYFPTNMSL-----DRGDCAVTINNV 198
           R+ P       P + GR   + E   PDN I     F  NM L     D   C +TINN 
Sbjct: 127 RIVPSICANLSPDQLGRVKGVVECSNPDNDIRR---FDANMRLFPPIIDSEKCPLTINNT 183

Query: 199 K----YDDYGTWTCGAGLDDGNE 217
                Y  Y  W CG  +  GN+
Sbjct: 184 LLQSCYLRYTEWACGVAVYTGNQ 206


>11_01_0738 - 6218730-6220173,6221969-6223056
          Length = 843

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 94  GEWRCHSGGHETGVEIIKTIELRVVNEVTALWKNVTVLHAKSVSLVCLTTKRLTP 148
           G WR    GH  G  ++  I +R  N  T  + N T   A    +V L  + L+P
Sbjct: 715 GLWRDEGDGHSAGNPVLYDINMRRYN--TFFYSNSTSFMASITVIVLLLQRMLSP 767


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.136    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,059,154
Number of Sequences: 37544
Number of extensions: 372654
Number of successful extensions: 765
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 2
length of query: 308
length of database: 14,793,348
effective HSP length: 82
effective length of query: 226
effective length of database: 11,714,740
effective search space: 2647531240
effective search space used: 2647531240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)