GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000881-TA|BGIBMGA000881-PA|IPR003599|Immunoglobulin
subtype, IPR001254|Peptidase S1 and S6, chymotrypsin/Hap
         (308 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   1.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   5.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   7.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 175  LGRFYFPTNMSLDRGDCAVTINNVKYDD 202
            L  F F T   LD  D  + INNV Y+D
Sbjct: 1413 LSDFGFSTEDILDTADEDLLINNVFYED 1440


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 74  GTTLSAGHCFKNITVTPED 92
           GT   A H F+  + TPED
Sbjct: 265 GTNTDARHLFRTASSTPED 283


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 4   PICIVLLSF-FILFNFPASIQGYRHFIDLETDGVETIFATENENVNIECK 52
           P+ +++ S+ FI+    A  +  R     +   V ++ ++EN+N + ECK
Sbjct: 228 PLFLIIYSYWFIIQAVAAHEKNMRE--QAKKMNVASLRSSENQNTSAECK 275


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 4   PICIVLLSF-FILFNFPASIQGYRHFIDLETDGVETIFATENENVNIECK 52
           P+ +++ S+ FI+    A  +  R     +   V ++ ++EN+N + ECK
Sbjct: 104 PLFLIIYSYWFIIQAVAAHEKNMRE--QAKKMNVASLRSSENQNTSAECK 151


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 185 SLDRGDCAVTINNVKYDDYGTWTCGAGLDDG 215
           +L++G C   I  V  D       GAG +DG
Sbjct: 452 NLEKGRCTGKIVTVGSDGNANIEIGAGEEDG 482


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,082
Number of Sequences: 429
Number of extensions: 3670
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 5
length of query: 308
length of database: 140,377
effective HSP length: 58
effective length of query: 250
effective length of database: 115,495
effective search space: 28873750
effective search space used: 28873750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)