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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000881-TA|BGIBMGA000881-PA|IPR003599|Immunoglobulin
subtype, IPR001254|Peptidase S1 and S6, chymotrypsin/Hap
         (308 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42840.1 68418.m05221 DC1 domain-containing protein contains ...    29   3.0  
At2g23200.1 68415.m02771 protein kinase family protein contains ...    29   3.0  
At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contai...    28   6.9  

>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 671

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 80  GHCFKNITVTPEDDGEWRCHSGGHET 105
           GHC K +T    DD + +CH  G +T
Sbjct: 64  GHCLKLLTTGAPDDTDQKCHLCGKKT 89


>At2g23200.1 68415.m02771 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 834

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 166 EDVTPDNAILGRFYFPTNMS-LDRGDCAVTINNVKYDDY 203
           E +TPDN  LGR + P +   L R D A  IN+ +  +Y
Sbjct: 215 EKITPDNDTLGRTWLPDDDDFLYRKDSARNINSTQTPNY 253


>At2g34920.1 68415.m04287 ubiquitin-protein ligase-related
          contains weak similarity to Ubiquitin-protein ligase E3
          Mdm2 (EC 6.3.2.-) (p53-binding protein Mdm2)
          (Oncoprotein Mdm2) (Double minute 2 protein)
          (Swiss-Prot:P23804) [Mus musculus]
          Length = 785

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 18 FPASIQGYRHFIDLETDGVETIFATENENVNIECKTDVPMAYCGFVHPSGKRYSFSGTTL 77
          FP + + +RH  D+   G    F+  +   N   K  + +A+   ++  GK+YS    T+
Sbjct: 29 FPVTERSHRHVTDMLNIGANLYFSERSTITNKRLKNIIDIAFS--INSLGKQYSTQTITI 86


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.136    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,167,010
Number of Sequences: 28952
Number of extensions: 291448
Number of successful extensions: 543
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 3
length of query: 308
length of database: 12,070,560
effective HSP length: 81
effective length of query: 227
effective length of database: 9,725,448
effective search space: 2207676696
effective search space used: 2207676696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)

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