BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000881-TA|BGIBMGA000881-PA|IPR003599|Immunoglobulin subtype, IPR001254|Peptidase S1 and S6, chymotrypsin/Hap (308 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g42840.1 68418.m05221 DC1 domain-containing protein contains ... 29 3.0 At2g23200.1 68415.m02771 protein kinase family protein contains ... 29 3.0 At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contai... 28 6.9 >At5g42840.1 68418.m05221 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 671 Score = 29.5 bits (63), Expect = 3.0 Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 80 GHCFKNITVTPEDDGEWRCHSGGHET 105 GHC K +T DD + +CH G +T Sbjct: 64 GHCLKLLTTGAPDDTDQKCHLCGKKT 89 >At2g23200.1 68415.m02771 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 834 Score = 29.5 bits (63), Expect = 3.0 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Query: 166 EDVTPDNAILGRFYFPTNMS-LDRGDCAVTINNVKYDDY 203 E +TPDN LGR + P + L R D A IN+ + +Y Sbjct: 215 EKITPDNDTLGRTWLPDDDDFLYRKDSARNINSTQTPNY 253 >At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contains weak similarity to Ubiquitin-protein ligase E3 Mdm2 (EC 6.3.2.-) (p53-binding protein Mdm2) (Oncoprotein Mdm2) (Double minute 2 protein) (Swiss-Prot:P23804) [Mus musculus] Length = 785 Score = 28.3 bits (60), Expect = 6.9 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 18 FPASIQGYRHFIDLETDGVETIFATENENVNIECKTDVPMAYCGFVHPSGKRYSFSGTTL 77 FP + + +RH D+ G F+ + N K + +A+ ++ GK+YS T+ Sbjct: 29 FPVTERSHRHVTDMLNIGANLYFSERSTITNKRLKNIIDIAFS--INSLGKQYSTQTITI 86 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.319 0.136 0.427 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,167,010 Number of Sequences: 28952 Number of extensions: 291448 Number of successful extensions: 543 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 542 Number of HSP's gapped (non-prelim): 3 length of query: 308 length of database: 12,070,560 effective HSP length: 81 effective length of query: 227 effective length of database: 9,725,448 effective search space: 2207676696 effective search space used: 2207676696 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 59 (27.9 bits)
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