GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000880-TA|BGIBMGA000880-PA|IPR001650|Helicase,
C-terminal
         (539 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          27   0.33 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   5.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   5.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   5.4  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 390 NWLSGTVEWPLPSPRTI 406
           N  SGT++W LP+ RT+
Sbjct: 218 NQCSGTIDWALPNKRTV 234


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 200 SCKVMVATDAIGLGINLSI 218
           SCKVM+ + +    INLS+
Sbjct: 152 SCKVMIQSVSFAFPINLSV 170


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 200 SCKVMVATDAIGLGINLSI 218
           SCKVM+ + +    INLS+
Sbjct: 385 SCKVMIQSVSFAFPINLSV 403


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 200 SCKVMVATDAIGLGINLSI 218
           SCKVM+ + +    INLS+
Sbjct: 385 SCKVMIQSVSFAFPINLSV 403


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,344
Number of Sequences: 317
Number of extensions: 5209
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 539
length of database: 114,650
effective HSP length: 60
effective length of query: 479
effective length of database: 95,630
effective search space: 45806770
effective search space used: 45806770
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)