Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000880-TA|BGIBMGA000880-PA|IPR001650|Helicase,
C-terminal
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 173 5e-44
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 40 7e-04
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 40 0.001
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 40 0.001
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 36 0.019
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 35 0.025
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 35 0.025
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 35 0.033
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 31 0.31
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 31 0.41
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 29 1.2
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 29 2.2
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 29 2.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 2.2
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 29 2.2
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 28 2.9
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 27 5.0
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 27 5.0
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 27 5.0
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 6.6
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 6.6
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 27 6.6
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 27 6.6
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 8.7
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 173 bits (421), Expect = 5e-44
Identities = 133/446 (29%), Positives = 218/446 (48%), Gaps = 32/446 (7%)
Query: 1 MERFLKSKSGVYCGPLKLLATEIYHKSNKSGTPCDLVTGEERRHASLYNTLINGTDD--N 58
+ER K G++ GPL+LLA EIY++ +G C+L TGEE R+ + +++ T + N
Sbjct: 190 LERLKTCKKGIFAGPLRLLAHEIYNRLQANGIACNLYTGEEIRNDYPFPQVVSCTVEMCN 249
Query: 59 DIETSDVEPYXXXXXXXXPSGHVACTVEMTSLNNKCLQADEIHLCGEAGAINLIEEICNT 118
T DV PS A T + L QA EIHLCGE + L+ I
Sbjct: 250 LSTTFDVAVIDEIQMMADPSRGYAWTQCLLGL-----QAKEIHLCGEESVVKLVRSIAKM 304
Query: 119 TGEVMEVRSYKRLTQLKVEDTAL-GSLDNVQPGDCIVCFNKNDIYSVSRAIEQR-GHEVA 176
T + V Y+RL L V + +L G L ++ GDC+V F++ +I+++ I+Q G + A
Sbjct: 305 TQDDFTVYRYERLNPLHVAEKSLNGKLSELKDGDCVVAFSRKNIFTLKSKIDQALGKKSA 364
Query: 177 VIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGE 236
VIYGSLPP + QA+ FN S +++A+DAIG+G+NL ++RI+F L K G
Sbjct: 365 VIYGSLPPEVRNQQASLFNSKSSDENILLASDAIGMGLNLGVKRIVFSDLKK----FSGV 420
Query: 237 KEMDVISISQALQIAGRAGRY---GSAWETGHVTSYRPEDLATLKTLLSQPPEPVTQAGL 293
+D I + Q QIAGRAGR+ GS G VT+ +D A L ++ P + + A +
Sbjct: 421 STID-IPVPQIKQIAGRAGRHNPNGSKQSAGIVTTLYQKDFAKLNRAMNLPTKNLFNACI 479
Query: 294 HPTSE----QMELYAYHLPHATLSSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEMIQHVP 349
+ + L++ +P + D + L + + + F+ E + H+
Sbjct: 480 GAKDDLFFRYLSLFSDDIPQ---KLIFDRYFKLAKT-TTPFVVSEGALSTFIIEYLDHIK 535
Query: 350 -LPLRARYVFCCAPI---NNKLPFVCATFLKMVRQYSRNEPI-TRNWLSGTVEWPLPSPR 404
L ++ + P+ + P ++ Q R + ++ +E +P+
Sbjct: 536 GLTIKDKIKLLGCPVLKHSKYAPLFIREIGCVIAQGKRLQIYDLKSVPLEILERGIPTTE 595
Query: 405 TILDLVHLESVFDVLELYLWLSYRFP 430
T +L LE + ++ Y+W S R+P
Sbjct: 596 T--ELQQLEQLHKLIVAYMWASIRYP 619
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 40.3 bits (90), Expect = 7e-04
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 120 GEVMEVRSYKRLTQLKVEDTALGSLDNVQPGDCIVCFNKNDIYSVSRAIEQRGHEVAVIY 179
G V + KR +L ++ + GS D+ + K+ + VS + Q G+ V+ IY
Sbjct: 322 GNVNNPKKRKRALELALKGSESGSPDST----LVFVPTKHHVEYVSELLVQAGYSVSKIY 377
Query: 180 GSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEM 239
GSL +L + N F +++ ++V TD GI++ L+ VIN D +
Sbjct: 378 GSLDQEARLNEINNFRLGKTN--LLVVTDVASRGIDI--------PLLANVINYDFPPQP 427
Query: 240 DVISISQALQIAGRAGRYGSAWETGHVTSYRPEDLATLKTLLSQP 284
V + + + A RAGR G W V + L L+ L++P
Sbjct: 428 KVF-VHRVGRTA-RAGRTG--WAYSLVRAEDAGYLLDLQLFLNRP 468
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 153 IVCFNKNDIYSVSRAIEQR---GHEVAVIY-GSLPPGTKLAQANKFNDPESSCKVMVATD 208
I C K D+ + R + Q H IY G + + + F + ++M+AT
Sbjct: 1420 IFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATK 1479
Query: 209 AIGLGIN-LSIRRIIFYSL 226
A GLGIN + +R ++ Y L
Sbjct: 1480 AFGLGINYMGVRLVVHYGL 1498
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 153 IVCFNKNDIYSVSRAIEQR---GHEVAVIY-GSLPPGTKLAQANKFNDPESSCKVMVATD 208
I C K D+ + R + Q H IY G + + + F + ++M+AT
Sbjct: 1420 IFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATK 1479
Query: 209 AIGLGIN-LSIRRIIFYSL 226
A GLGIN + +R ++ Y L
Sbjct: 1480 AFGLGINYMGVRLVVHYGL 1498
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 35.5 bits (78), Expect = 0.019
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
Query: 164 VSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLSIRRIIF 223
+ R E +AV +G L P K F KV+ AT+ +G+N+ + ++F
Sbjct: 605 IGRMREMLSRGLAVHHGGLLPIIKEIVEILFQ--RGLVKVLFATETFAMGVNMPAKSVVF 662
Query: 224 YSLIKPVINEDGEKEMDVISISQALQIAGRAGRYGSAWETGHVTSYRPE--DLATLKTLL 281
K DG D++ + Q +GRAGR G + R E D A+L+ ++
Sbjct: 663 SGTQK----HDGRNFRDLLP-GEYTQCSGRAGRRGLDVTGTVIILSRSELPDTASLRHMI 717
Query: 282 SQP 284
P
Sbjct: 718 MGP 720
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 35.1 bits (77), Expect = 0.025
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 135 KVEDTALGSLDNVQPGDCIVCFNK--NDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQAN 192
K +DT L L N G+ I+ F + ND ++ + G ++G L +L N
Sbjct: 270 KHKDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALN 329
Query: 193 KFNDPESSCKVMVATDAIGLGINLSIRRII 222
KF S +VATD G+++ + ++
Sbjct: 330 KFKSGARS--TLVATDVAARGLDIPLVDVV 357
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 35.1 bits (77), Expect = 0.025
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 198 ESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRY 257
E KV+ AT+ +G+N+ + ++F ++ K DG K IS + +Q++GRAGR
Sbjct: 541 EGLLKVLFATETFSIGLNMPAKTVVFTNVRK----FDG-KTFRWISGGEYIQMSGRAGRR 595
Query: 258 G 258
G
Sbjct: 596 G 596
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 34.7 bits (76), Expect = 0.033
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 11/107 (10%)
Query: 153 IVCFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGL 212
I C K+ ++R + GH VA + G+L + A + F + KV+V T+ I
Sbjct: 357 IFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFR--VGTSKVLVTTNVIAR 414
Query: 213 GINLS-IRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYG 258
GI++S + ++ Y + +++ G + L GR GR+G
Sbjct: 415 GIDVSQVNLVVNYDM---PLDQAGRPDPQTY-----LHRIGRTGRFG 453
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 31.5 bits (68), Expect = 0.31
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 171 RGHEVAVIYGSLPPGTKLAQANKFNDPESSCKV-MVATDAIGLGINLS 217
RG+ + G++P + + FN P+S V +++T A GLGINL+
Sbjct: 743 RGYNYQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTRAGGLGINLN 790
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 31.1 bits (67), Expect = 0.41
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 171 RGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLSIRRIIFYSLIKPV 230
R + V I+G + G +L N F C V+VATD G+++ +++ ++ P+
Sbjct: 439 RKYNVVGIHGDMSQGARLQALNDFK--SGKCPVLVATDVAARGLDIPKVQLVI-NVTFPL 495
Query: 231 INED 234
ED
Sbjct: 496 TIED 499
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.5 bits (63), Expect = 1.2
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 15/82 (18%)
Query: 178 IYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEK 237
I+G LP ++ + F D + ++ VATD G GI++ + VIN D
Sbjct: 325 IHGGLPQEERIKRYKAFKDFDK--RICVATDVFGRGIDI--------ERVNIVINYDMPD 374
Query: 238 EMDVISISQALQIAGRAGRYGS 259
D L GRAGR+G+
Sbjct: 375 SPD-----SYLHRVGRAGRFGT 391
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 28.7 bits (61), Expect = 2.2
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 465 EQMIRDEDSGFAIGHGSKRVNKMLAGQSMGEEKGKLSELLVARGLITPQMLKKLQQELST 524
E MI DE GH R + M + G+E + E V I ++ + Q E
Sbjct: 761 EDMIHDEQQETKSGHEQFREHAMKEKEKKGKENENMGETTVDHENINSNVMDE-QGEKQK 819
Query: 525 DKKIDRTKK 533
D +D +K
Sbjct: 820 DDVVDMVRK 828
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 198 ESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRY 257
E +++ AT+ +G+N+ R ++F K N ++ + +Q++GRAGR
Sbjct: 457 EGLVRILFATETFSIGLNMPARTVLFTKAQKFSGN-----NFRWLTSGEYMQMSGRAGRR 511
Query: 258 G 258
G
Sbjct: 512 G 512
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 2.2
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 231 INEDGEKEMDVISISQALQIAGRAGRYGSAWETGHVTSYRPEDLATLKTLLSQPPEPVTQ 290
I+ED + E+D + ++AL G R+G + +DL + + S PP P T
Sbjct: 719 IDEDKQNEVDPSTSARALPPPGL--RFGKVDTLASLAHDDLDDLPAVPRIFSPPPLPKTP 776
Query: 291 AGLHPTSEQM 300
+G +E M
Sbjct: 777 SGEFGDNEFM 786
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 171 RGHEVAVIYGSLPPGTKLAQANKFNDPESSCKV-MVATDAIGLGINL-SIRRIIFY 224
RG++ + G++ + + FNDPE V ++++ A G GINL R+I +
Sbjct: 650 RGYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSKAGGCGINLIGANRLILF 705
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 202 KVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGR 256
++++AT + G+N +I G K+MD ++ LQ+ GRAGR
Sbjct: 1448 QILIATSTLAWGVNTPAHLVIVKGTEYYDAKIGGYKDMD---LTDVLQMLGRAGR 1499
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 180 GSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLS 217
GS+ P + KFN+ S +++ T GLG+NL+
Sbjct: 1771 GSVEPTKRQEAVTKFNNDPSIDVLLLTTHVGGLGLNLT 1808
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 469 RDEDSGFAIGHGSKRVNKMLAGQSMGEEKGKLSELLVA 506
+D D G I SK N+ LAG + G G SEL++A
Sbjct: 178 KDIDGGIPISIPSK--NRPLAGSASGSSSGLHSELMLA 213
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 35 DLVTGEERRHASLYNTLINGTDDNDIETS 63
DL + E H S + LING +ND ET+
Sbjct: 16 DLFSENEDNHTSQQDELINGHIENDSETA 44
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.1 bits (57), Expect = 6.6
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 12/56 (21%)
Query: 203 VMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYG 258
V++AT + LGIN+ R ++F +++ ++ QA AGRAGR G
Sbjct: 1251 VVIATRTLSLGINMPCRTVVFLG---------DSLQLNALNFHQA---AGRAGRRG 1294
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 27.1 bits (57), Expect = 6.6
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 291 AGLHPTSEQMELYAYHLPHATLSSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEMIQHVPL 350
A + T M +Y L T S +++F D+ + E LA++++ VP+
Sbjct: 1027 ASYYVTHNSMAIYNRLLMQTT--SFIELFRVFSFSDEFKHIPVREEEKVELAKLLERVPI 1084
Query: 351 PLRARYVFCCAPIN 364
P+R R A IN
Sbjct: 1085 PIRERLDEPAAKIN 1098
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 27.1 bits (57), Expect = 6.6
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 78 SGHVACTVEMTSLNNKCLQADEIHLCGEAGAINLIE-EICNTTGEVM 123
S H CT +LN C +AD I EA ++L E EIC+ +M
Sbjct: 278 SEHNGCTRVTPNLNPTCFKAD-IDYLNEACGLSLPEDEICHLLTRMM 323
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 12 YCGPLKLLATEIYHKSNKSGTPCDLVTGEERRHASLYNTLINGTDDNDI 60
YCG L LA EI G P D+ + ++ L N L G + D+
Sbjct: 163 YCGSLHYLAPEIVSHKPYRGAPADVWSCGVILYSLLSNKLPFGGQNTDV 211
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 26.6 bits (56), Expect = 8.7
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 18/147 (12%)
Query: 111 LIEEICNTTGEVMEVRSYKRLTQLKVEDTALGSLDNVQPGDCIVCFNKNDIYSVSRAIEQ 170
L E+ + E+ EVR+ K TQ+K+ + + + KND +A+ +
Sbjct: 110 LEEQSTSYQKEIEEVRNEKEATQVKIHELLDAKWKEI--AELKTQIEKND-----QALSE 162
Query: 171 RGHEVAVIYGSLP-PGTKLAQANK-FNDP----ESSCKVMVATDAIGLGINLSIRRIIFY 224
+ HEV V +L T L K F D E+ CK + A + LS+
Sbjct: 163 KNHEVMVSNQALQMKDTNLTNLEKLFADSREQLETKCKELAAAEQ--QLQELSVHNQQLE 220
Query: 225 SLIKPVINEDGEKEMDVISISQALQIA 251
IK V E++ I+ Q LQI+
Sbjct: 221 ESIKQV---SSSIELEKINAEQRLQIS 244
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,762
Number of Sequences: 5004
Number of extensions: 103315
Number of successful extensions: 310
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 26
length of query: 539
length of database: 2,362,478
effective HSP length: 76
effective length of query: 463
effective length of database: 1,982,174
effective search space: 917746562
effective search space used: 917746562
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -