Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000880-TA|BGIBMGA000880-PA|IPR001650|Helicase,
C-terminal
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0123 - 22923058-22923072,22923711-22923723,22924355-22926504 292 5e-79
03_05_1111 - 30479793-30479823,30479887-30479978,30480261-304804... 171 9e-43
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 38 0.015
01_01_0602 - 4484972-4485450,4485949-4485997,4486108-4486237,448... 38 0.015
03_02_0758 + 10954268-10954841,10955988-10957145,10957176-109572... 38 0.027
11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,378... 36 0.062
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 36 0.11
06_01_0645 + 4670966-4671021,4671128-4671177,4671270-4671350,467... 35 0.14
02_05_0685 + 30891289-30891810,30892740-30892915,30893379-308934... 35 0.19
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302... 34 0.25
09_04_0287 - 16407324-16407551,16407647-16407748,16407824-164079... 33 0.43
07_02_0023 - 11918735-11918827,11919139-11919231,11919320-119194... 33 0.43
03_05_0952 + 29103879-29103983,29104103-29104600,29104693-291047... 33 0.43
12_01_1023 + 10458092-10458397,10459126-10459254,10459335-104595... 33 0.57
04_04_0064 + 22446902-22447045,22448323-22448380,22448398-224485... 32 1.0
06_03_1255 + 28780181-28781172,28782065-28782932 32 1.3
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 31 1.8
03_05_0865 - 28365430-28367640 31 1.8
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 31 1.8
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 31 2.3
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303 31 3.1
01_05_0723 + 24607800-24608357,24609616-24610158,24610281-246106... 30 4.0
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 30 4.0
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 29 7.1
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 29 9.3
>04_04_0123 - 22923058-22923072,22923711-22923723,22924355-22926504
Length = 725
Score = 292 bits (716), Expect = 5e-79
Identities = 175/459 (38%), Positives = 252/459 (54%), Gaps = 21/459 (4%)
Query: 1 MERFLKSKSGVYCGPLKLLATEIYHKSNKSGTPCDLVTGEERRHASLYNTLINGTDDNDI 60
+ RF +KSGVYC PL+LLA E++ K N G C L TG+E + N + +
Sbjct: 222 LTRFAAAKSGVYCSPLRLLAMEVFDKVNALGVYCSLRTGQEIKEVPFSNHVACTIEMLST 281
Query: 61 ETS-DVEPYXXXXXXXXPSGHVACTVEMTSLNNKCLQADEIHLCGEAGAINLIEEICNTT 119
E +V P A T + L +ADEIHLCG+ + ++ +IC T
Sbjct: 282 EEPYEVAVVDEIQMMADPVRGYAWTRAVLGL-----KADEIHLCGDPSVLKIVRKICADT 336
Query: 120 GEVMEVRSYKRLTQLKVE-DTALGSLDNVQPGDCIVCFNKNDIYSVSRAIEQ-RGHEVAV 177
G+ +EV Y+R L VE T LG L NV+ GDCIV F++ +I+ V AIE+ H+ V
Sbjct: 337 GDDLEVHQYERFKPLVVEAKTLLGDLKNVRSGDCIVAFSRREIFEVKLAIEKFTKHKCCV 396
Query: 178 IYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEK 237
IYG+LPP T+ QA FN+ ++ V+VA+DA+G+G+NL+IRR++FYSL K N D
Sbjct: 397 IYGALPPETRRQQAKLFNEQDNEYDVLVASDAVGMGLNLNIRRVVFYSLAK--YNGD--- 451
Query: 238 EMDVISISQALQIAGRAGRYGSAWETGHVTSYRPEDLATLKTLLSQPPEPVTQAGLHPTS 297
M ++ SQ QIAGRAGR GS + G T++ +DL L L QP E + GL P
Sbjct: 452 RMVPVAASQVKQIAGRAGRRGSIYPDGLTTTFLLDDLDYLIQCLQQPFEEAKKVGLFPCF 511
Query: 298 EQMELYAYHLPHATLSSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEMIQHVP-LPLRARY 356
EQ+E +A P T + L+D F C V DS YFMC+ E K +A M++ + L L+ RY
Sbjct: 512 EQVESFAIQFPDLTFNELLDKFRENCRV-DSTYFMCHQESIKKVANMLERIQGLSLKDRY 570
Query: 357 VFCCAPINNKLPFVCATFLKMVRQYSRNEPITRNWLSGTVEWPLPSPRTILDLVHLESVF 416
FC AP+N + P L+ YS++ + S + P S + +L+ LE+
Sbjct: 571 NFCFAPVNIRDPKAMYHLLRFATNYSQSRRV-----SIAMGMPKGSAKNDTELLDLETKH 625
Query: 417 DVLELYLWLSYRF-PDMFPDVKLVRDMETELDAIIQQGI 454
VL +YLWLS+ F D FP V+ +M + ++ + +
Sbjct: 626 QVLSMYLWLSHHFEEDHFPHVQKAEEMSINIADLLAKSL 664
>03_05_1111 -
30479793-30479823,30479887-30479978,30480261-30480410,
30482229-30482354,30482563-30482628,30483134-30483214,
30483310-30483422,30483553-30483721,30484253-30484330,
30485489-30485752,30486239-30486379,30486548-30486759,
30486819-30486940,30487281-30487398,30487925-30487997
Length = 611
Score = 171 bits (417), Expect = 9e-43
Identities = 112/339 (33%), Positives = 174/339 (51%), Gaps = 25/339 (7%)
Query: 123 MEVRSYKRLTQLKVEDTALGSLDNVQPGDCIVCFNKNDIYSVSRAIEQRG-HEVAVIYGS 181
M+V+ Y+RL+ L T LGS N++ GDC+V F++ IY + R IE G H +V+YGS
Sbjct: 268 MQVQYYERLSPLVPLKTTLGSFSNIKAGDCVVTFSRRSIYMLKRRIEMGGKHLCSVVYGS 327
Query: 182 LPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDV 241
LPP T+ QA FND +S+ V+VA+DAIG+G+NL+I RIIF +L K DG +
Sbjct: 328 LPPETRTKQATMFNDQDSNLNVLVASDAIGMGLNLNISRIIFSTLEK----FDGICNRE- 382
Query: 242 ISISQALQIAGRAGRYGSAWETGHVTSYRPEDLATLKTLLSQPPEPVTQAGLHPTSEQME 301
+++++ QIAGRAGRYGS + G VT + L L + L P + +AGL PT + +
Sbjct: 383 LTVAEIKQIAGRAGRYGSKFPVGEVTCLNSDHLPLLHSALKSPSPIIERAGLFPTFDVLS 442
Query: 302 LYAYHLPHATLSSLMDIFVHLCTVDDSLYFMCNTEGF---------------KFLAEMIQ 346
LY+ +++ F+ + YF+ + E + AE++Q
Sbjct: 443 LYSRLHGTDFFQPILERFLDKAKLSPD-YFIADCEDMLCCGQAKLGSTLVQPRSNAELVQ 501
Query: 347 HVPLPLRARYVFCCAPINNKLPFVCATF-LKMVRQYSRNEPITRNWLSGTVEWPLPSPRT 405
+ + C NK F ++ Y++ + + L P++
Sbjct: 502 EEAMRNKKPSQLACMQYRNKETISLIFFEMQFAENYAKKGIVRLKEI--FTPGTLQVPKS 559
Query: 406 ILDLVHLESVFDVLELYLWLSYRFPDMFPDVKLVRDMET 444
L LES+ VLELY+WLS+R D +PD +L ++
Sbjct: 560 HNQLKELESIHKVLELYVWLSFRLEDSYPDRELAASQKS 598
Score = 64.9 bits (151), Expect = 2e-10
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 12/125 (9%)
Query: 5 LKSKSGVYCGPLKLLATEIYHKSNKSGTPCDLVTGEERRHASLYNTLINGTDDND--IET 62
L + GVYCGPL+LLA E+ + NK+ PC+L+TG+ER I G + +E
Sbjct: 107 LMNSVGVYCGPLRLLAREVAQRLNKANVPCNLITGQEREE-------IEGAKHSSVTVEM 159
Query: 63 SDVEPYXXXXXXXXPSGHVACTVEMTSLNNKCLQ--ADEIHLCGEAGAINLIEEICNTTG 120
+D+ V C S L +DE+H+CG+ + LI+ I TG
Sbjct: 160 ADMTT-EYQCAVIDEIQMVGCRSRGFSFTRALLGLCSDELHVCGDPAVVPLIQRILEPTG 218
Query: 121 EVMEV 125
+V+ +
Sbjct: 219 DVVTI 223
>01_07_0197 + 41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 38.3 bits (85), Expect = 0.015
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 142 GSLDNVQPGDCIVCFNK--NDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPES 199
G L + P D ++ F++ I+ + + + G A +Y +P G+K + KF D +
Sbjct: 1110 GRLPHTMP-DKVIIFSQFLEHIHVIEQQLTIGGITYAGMYSPMPLGSKRSSLTKFKD-DP 1167
Query: 200 SCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEM 239
+C +V LG++LS +F L++P+ + E+++
Sbjct: 1168 ACMALVMDGTAALGLDLSFVSYVF--LMEPIWDRSMEEQV 1205
>01_01_0602 -
4484972-4485450,4485949-4485997,4486108-4486237,
4486636-4486778,4486819-4486877,4487167-4487200,
4487489-4487629,4487719-4487907,4488027-4488122,
4488163-4488225,4488588-4489097
Length = 630
Score = 38.3 bits (85), Expect = 0.015
Identities = 16/72 (22%), Positives = 31/72 (43%)
Query: 153 IVCFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGL 212
+ C N +V + + +G +P ++ NKF + E C +V TD
Sbjct: 378 VFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVENLNKFRNEEGDCPTLVCTDLAAR 437
Query: 213 GINLSIRRIIFY 224
G++L + +I +
Sbjct: 438 GLDLDVDHVIMF 449
>03_02_0758 +
10954268-10954841,10955988-10957145,10957176-10957216,
10957412-10957448,10957534-10957954,10958201-10958234
Length = 754
Score = 37.5 bits (83), Expect = 0.027
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 147 VQPGDCIV-CFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMV 205
+ GD +V K + + + QRG +A ++G +++ KF V+V
Sbjct: 462 IDDGDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFK--SGVYHVLV 519
Query: 206 ATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYG 258
ATD G+++ IK V+N D KEMD+ + GR GR G
Sbjct: 520 ATDVAARGLDI--------KSIKTVVNFDIAKEMDM-----HIHRIGRTGRAG 559
>11_01_0490 -
3782195-3782305,3782929-3783021,3783199-3783294,
3783373-3783521,3783886-3784039,3784110-3784205,
3784290-3784379,3784856-3785014,3785150-3785371,
3785552-3785668,3785753-3785824,3786768-3786836,
3786947-3787051,3787248-3787562,3787814-3788809
Length = 947
Score = 36.3 bits (80), Expect = 0.062
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 145 DNVQP--GDCIVCFNKND--IYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESS 200
DN++ I+C ++ D + ++ + +AV + L P K F E
Sbjct: 371 DNIEQVFSSAILCLSEEDRGLPAIELMLPLLKRGIAVHHSGLLPLIKELVELLFQ--EGL 428
Query: 201 CKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYG 258
K + AT+ +G+N+ + ++F S+ K DG+ + S + +Q++GRAGR G
Sbjct: 429 VKALFATETFAMGLNMPAKTVVFTSVKK----WDGDTNRYIAS-GEYIQMSGRAGRRG 481
>12_01_1080 +
11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 35.5 bits (78), Expect = 0.11
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 202 KVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYGSAW 261
+V+ AT + G+NL RR+IF +P I D I ++ Q++GRAGR G
Sbjct: 859 RVLAATSTLAAGVNLPARRVIFR---QPRIGR------DFIDGTRYKQMSGRAGRTGIDT 909
Query: 262 ETGHVTSYRPEDLATLKTLLSQPPEPV 288
+ + +PE++ + +L P+
Sbjct: 910 KGESILVCKPEEVKRITGILRSNCTPL 936
>06_01_0645 +
4670966-4671021,4671128-4671177,4671270-4671350,
4671862-4672078,4673220-4673607,4673830-4674033,
4675174-4675334,4675401-4675586,4675732-4675963,
4676530-4676732,4677074-4677208,4677367-4677550
Length = 698
Score = 35.1 bits (77), Expect = 0.14
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 19/126 (15%)
Query: 149 PGDCIVCFN-KNDIYSVSRAIEQRGHEV---------AVIYGSLPPGTKLAQANKFND-P 197
PGD + + +I S+ R I++R ++ IY SLP Q N F P
Sbjct: 271 PGDILAFLTGQEEIESLDRLIQERARQLPPQRSKIWTTPIYSSLPSEQ---QMNAFKPAP 327
Query: 198 ESSCKVMVATDAIGLGINL-SIRRIIFYSLIKP-VINE-DGEKEMDVISIS--QALQIAG 252
+ KV++AT+ + + I+ +I ++K N G + + +I +S QALQ +G
Sbjct: 328 AGTRKVVLATNIAETSVTIPGIKYVIDPGMVKARAYNPVTGMESLIIIPVSKAQALQRSG 387
Query: 253 RAGRYG 258
RAGR G
Sbjct: 388 RAGREG 393
>02_05_0685 +
30891289-30891810,30892740-30892915,30893379-30893492,
30893846-30893954,30894038-30894124,30895137-30895736,
30895823-30896101,30896808-30896897,30897151-30897507,
30897924-30898160,30898733-30898953,30899856-30899955,
30900042-30900188,30900287-30900385
Length = 1045
Score = 34.7 bits (76), Expect = 0.19
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 202 KVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYG 258
KV+ AT+ + GIN+ R + SL K + D +++ ++ ++ Q+AGRAGR G
Sbjct: 438 KVVFATETLAAGINMPARTSVISSLSKRI---DAGRQL--LTPNELFQMAGRAGRRG 489
>02_04_0080 -
19529575-19529643,19529756-19529938,19530061-19530210,
19530297-19530379,19530497-19530599,19530709-19530918,
19531023-19531183,19531275-19531351,19531483-19531610,
19531695-19531935,19532047-19532180,19532261-19532435,
19532587-19532656,19532746-19532803,19532887-19532994,
19533088-19533283,19533381-19533727,19534008-19534034,
19534334-19534336
Length = 840
Score = 34.3 bits (75), Expect = 0.25
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 86 EMTSLNNKCLQADEIHLCGEAGAINLIEEICNTTGEVMEVRSYKRLTQLKVEDTALGSLD 145
E NK L+A+E L G+A A+ E C E + + +++ Q +D A GS D
Sbjct: 62 EQEPSKNKKLKAEESDLNGKATAVKEFSEFCKAIREHLTIEDMRKILQGNEQD-ASGSED 120
Query: 146 NVQP 149
V P
Sbjct: 121 AVVP 124
>09_04_0287 -
16407324-16407551,16407647-16407748,16407824-16407922,
16408213-16408332,16408513-16408632,16408740-16408834,
16409109-16409365,16410134-16410309,16410401-16410587,
16410656-16411002,16411722-16411823,16411917-16412414,
16412520-16412624
Length = 811
Score = 33.5 bits (73), Expect = 0.43
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 168 IEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMV-ATDAIGLGINLS 217
+E +G +V I GS+ + Q +FND SS + + +T A GLGINL+
Sbjct: 607 LETKGLQVCRIDGSVKLEERRRQIAEFNDLNSSMNIFILSTRAGGLGINLT 657
>07_02_0023 -
11918735-11918827,11919139-11919231,11919320-11919484,
11920234-11920327,11921012-11921136,11921228-11921313,
11921786-11921864,11923777-11923857,11924153-11924260,
11924870-11924994,11925110-11925530
Length = 489
Score = 33.5 bits (73), Expect = 0.43
Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 16/140 (11%)
Query: 170 QRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINL-SIRRIIFYSLIK 228
QRG ++G + + F E SC +M+ATD G+++ + +I YS
Sbjct: 341 QRGWSAVSVHGDKAQHDRTKALSLFK--EGSCPLMIATDVASRGLDIPDVEVVINYSY-- 396
Query: 229 PVINEDGEKEMDVISISQALQIAGRAGRYGSA--WETGHVTSYRPEDLATLKTLLSQPPE 286
P+ ED + GRAG+ G A + T E + L+ P
Sbjct: 397 PLTTED---------YVHRIGRTGRAGKKGVAHTFFTQENKGLAGELVNVLREAGQVVPP 447
Query: 287 PVTQAGLHPTSEQMELYAYH 306
+T+ G H ++ ++Y H
Sbjct: 448 ALTKFGTHVKKKESQIYGSH 467
>03_05_0952 +
29103879-29103983,29104103-29104600,29104693-29104794,
29105552-29105898,29105967-29106153,29106242-29106417,
29106976-29107065,29107066-29107322,29107593-29107687,
29107801-29107920,29108111-29108230,29108410-29108508,
29108588-29108689,29108884-29109111
Length = 841
Score = 33.5 bits (73), Expect = 0.43
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 168 IEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMV-ATDAIGLGINLS 217
+E +G +V I GS+ + Q +FND SS + + +T A GLGINL+
Sbjct: 637 LETKGLQVCRIDGSVKLEERRRQIAEFNDLNSSMNIFILSTRAGGLGINLT 687
>12_01_1023 +
10458092-10458397,10459126-10459254,10459335-10459553,
10459649-10459987,10460095-10460199,10460697-10460807,
10461438-10461688,10462023-10462146,10462440-10462716,
10463212-10463357,10463449-10463598,10463678-10463910,
10464246-10464375,10464406-10464510,10464636-10464914
Length = 967
Score = 33.1 bits (72), Expect = 0.57
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 198 ESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRY 257
E K + AT+ +G+N+ + ++F ++ K DG++ +S + +Q++GRAGR
Sbjct: 399 EGLIKCLFATETFSIGLNMPAKTVVFTNVRK----FDGDR-FRWLSSGEYIQMSGRAGRR 453
Query: 258 G 258
G
Sbjct: 454 G 454
>04_04_0064 +
22446902-22447045,22448323-22448380,22448398-22448528,
22449267-22449332,22449423-22449510,22450088-22450158,
22450243-22450302,22450418-22450523,22450649-22450686,
22450990-22451082,22451156-22451220,22451633-22451645,
22451733-22451813,22452200-22452308,22452423-22452544
Length = 414
Score = 32.3 bits (70), Expect = 1.0
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 454 IFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLAGQSMGEEKGKLSELLVARGLITPQ 513
I+Q+ L + QM+ D+ + +R N+ S+ L +LL +GL+T Q
Sbjct: 184 IYQLDDLNEYNLQMVPGNDASLTV---LERENRTSNEASLTGMLNVLDDLLQRQGLMTDQ 240
Query: 514 MLKKLQQELSTDKKI 528
+ +KL Q LS + KI
Sbjct: 241 LERKLCQALSRNDKI 255
>06_03_1255 + 28780181-28781172,28782065-28782932
Length = 619
Score = 31.9 bits (69), Expect = 1.3
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 14/130 (10%)
Query: 104 GEAGAINLIEEICNTTGEVMEVRSYKRLTQLKVEDTALGSLDNVQPGDCIVCFNKNDIYS 163
G AGA NL + EV V+ R+ L L L P + C +K D+
Sbjct: 391 GRAGAANL-----DVIQEVEYVKEEARIIYL------LECLQKTPPPVLVFCEHKADVDY 439
Query: 164 VSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINL-SIRRII 222
+ + +G E I+G + F E V+VATD G+++ I+ +I
Sbjct: 440 IQEFLLLKGVEAVAIHGGKDDEERKDAFKSFKASEKD--VLVATDVASKGLDIPDIQHVI 497
Query: 223 FYSLIKPVIN 232
Y + + N
Sbjct: 498 NYDMPAEIEN 507
>07_03_1424 -
26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 31.5 bits (68), Expect = 1.8
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 435 DVKLVRDMETELDAIIQQGIFQITRLLRNSEQMIRDEDSGF-AIGHGSKRVNKMLAGQSM 493
++ LV++ ++ + +++ +L +SEQ+++DE + ++ G K K++ M
Sbjct: 797 EISLVKENAEKMYGHDEISVYRQNEILHSSEQLLQDELTHIKSLNEGLK--EKLII---M 851
Query: 494 GEEKGKLSELLVAR 507
EE KLSE++VA+
Sbjct: 852 AEESTKLSEIIVAK 865
>03_05_0865 - 28365430-28367640
Length = 736
Score = 31.5 bits (68), Expect = 1.8
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 19/170 (11%)
Query: 119 TGEVMEVRSYKRLTQLKVEDTALGSLDNVQPGDCIVCFNKNDIYSVSRAIEQRGHEVAVI 178
T V+ + +++++L+ T LG + + C K + ++ +++ G V +
Sbjct: 554 TQNVIMTKESEKMSRLQKILTDLGDKPAI-----VFCNTKKSADARAKDLDKAGFRVTTL 608
Query: 179 YGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKE 238
+G + + F + + V+VATD G GI++ + VIN +
Sbjct: 609 HGGKSQEQRETSLDGFRNRRFT--VLVATDVAGRGIDIPD--------VAHVINYEMPSS 658
Query: 239 MDVISISQALQIAGRAGRYGSAWETGHVTSYRPEDLATLKTLLSQPPEPV 288
+D + + + GRAG+ G A T +T + LK +L Q PV
Sbjct: 659 ID--TYTHRIGRTGRAGKKGLA--TSFLTLENTDIFFDLKQMLIQSNSPV 704
>02_01_0451 -
3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 31.5 bits (68), Expect = 1.8
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 202 KVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYG 258
KV+ +T+ +G+N R + + + DG++ ++ + +Q+AGRAGR G
Sbjct: 814 KVLFSTETFAMGVNAPARTLKDLVVFDSLRKFDGKEHRKLLP-GEYIQMAGRAGRRG 869
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 31.1 bits (67), Expect = 2.3
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 470 DEDSGFA----IGHGSKRVNKMLAGQSMGE---EKGKLSELLVARGLITPQMLKKLQQEL 522
D SGF +GH SKR NK+ A +G+ +G++ TP + KL+
Sbjct: 509 DGHSGFQKIAMLGHPSKR-NKLSADDDVGDAARRQGRIGRGFTPTRPSTPASIDKLENAP 567
Query: 523 STDKKIDRTKKNRNRRK 539
+T ++ RT RN K
Sbjct: 568 TTKQRSVRTVTERNESK 584
>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
Length = 462
Score = 30.7 bits (66), Expect = 3.1
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 85 VEMTSLNNKCLQADEIHLCGEAGAINLIEEICNTTGEVMEVRSYKRLTQLKVEDTALGSL 144
+ MT+ N + D + ++I I N +V + SY L + D ALG L
Sbjct: 203 INMTTYNRIWSELDAV--VASVRNTDIIRMIVNCNPKVGQECSYSSELPLHLPDRALGGL 260
Query: 145 DNVQPGDCIVCFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGT 186
++ + K + A++QR V +I+G PPGT
Sbjct: 261 EDFKLNKS----QKVAVLDCVSAMQQRSSSVRLIWG--PPGT 296
>01_05_0723 +
24607800-24608357,24609616-24610158,24610281-24610697,
24610804-24611244
Length = 652
Score = 30.3 bits (65), Expect = 4.0
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 442 METELDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLAGQSMGEEKGKL- 500
M E ++ +GI++ + + EQ++ E + HG +R L G S+G L
Sbjct: 365 MFEETGVLVHRGIYEAAKGIY--EQLM-PEIAAHLAAHG-ERARLRLTGHSLGGSLALLV 420
Query: 501 SELLVARGLITPQML 515
S +LVARG++ P+ L
Sbjct: 421 SLMLVARGVVGPEAL 435
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 30.3 bits (65), Expect = 4.0
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 283 QPPEPVTQAGLHPTSEQMELYAYHLPHATLSSLMDIFVHLCTVDDSLYFM 332
+PP PV H M L P+A L L+D+ V + L F+
Sbjct: 175 RPPRPVEADASHAVGGYMSLLMLRAPYAVLKDLLDVGVKRIGIATVLVFL 224
>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 29.5 bits (63), Expect = 7.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 300 MELYAYHLPHATLSSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEMIQ 346
M L LP TL + D+ D + F C+ + K + EMIQ
Sbjct: 1565 MVLVQCKLPVITLQMIFDLLNQKIASDSRMNFRCDLDRMKIILEMIQ 1611
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 29.1 bits (62), Expect = 9.3
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 151 DC--IVCFNKNDIYSVSRAIEQRGHEVAVIYGSLPP-GTK--LAQANKFNDP 197
DC ++C N++Y+ ++ +++ G LPP G + L + KF+DP
Sbjct: 712 DCCKVLCTQTNNLYNAKNMLKSNNLDLSSTGGKLPPHGPRRVLVPSRKFSDP 763
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,484,877
Number of Sequences: 37544
Number of extensions: 647588
Number of successful extensions: 1481
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1453
Number of HSP's gapped (non-prelim): 35
length of query: 539
length of database: 14,793,348
effective HSP length: 86
effective length of query: 453
effective length of database: 11,564,564
effective search space: 5238747492
effective search space used: 5238747492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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