GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000880-TA|BGIBMGA000880-PA|IPR001650|Helicase,
C-terminal
         (539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36437| Best HMM Match : Helicase_C (HMM E-Value=2e-13)             182   6e-46
SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32)                  36   0.062
SB_26608| Best HMM Match : Serglycin (HMM E-Value=9.6)                 36   0.062
SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)            36   0.062
SB_54840| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.3  
SB_47844| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)              31   2.3  
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   3.1  
SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   3.1  
SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)              30   4.1  
SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   4.1  
SB_56356| Best HMM Match : Helicase_C (HMM E-Value=1.3e-21)            29   7.1  
SB_5686| Best HMM Match : Mur_ligase_C (HMM E-Value=1.1e-08)           29   7.1  
SB_58300| Best HMM Match : AAA_5 (HMM E-Value=0)                       29   9.4  
SB_908| Best HMM Match : DUF1682 (HMM E-Value=3.1e-38)                 29   9.4  

>SB_36437| Best HMM Match : Helicase_C (HMM E-Value=2e-13)
          Length = 479

 Score =  182 bits (443), Expect = 6e-46
 Identities = 87/196 (44%), Positives = 136/196 (69%), Gaps = 6/196 (3%)

Query: 142 GSLDNVQPGDCIVCFNKNDIYSVSRAIEQ-RGHEVAVIYGSLPPGTKLAQANKFNDPESS 200
           G L  V+PGDCIV F++ +++ + + IE+ +  + A++YG LPP T++ QA KFN+P+  
Sbjct: 2   GQLHQVRPGDCIVAFSQRELFKLRQRIEKAKVTKCAIVYGGLPPATRVEQAAKFNNPDDE 61

Query: 201 CKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYGSA 260
            K+++A+DAIG+G+NL+I+RIIF+++ K     DG+  +  ++ S   QIAGRAGRYGS 
Sbjct: 62  HKILIASDAIGMGLNLNIKRIIFHAMEK----FDGQS-VTQLTASHVKQIAGRAGRYGSE 116

Query: 261 WETGHVTSYRPEDLATLKTLLSQPPEPVTQAGLHPTSEQMELYAYHLPHATLSSLMDIFV 320
           +  G VT+     L TLK L+SQP + V +AGL P+ EQ+E+ ++ LP+ATL  L+D+F+
Sbjct: 117 YPKGEVTTLYASSLPTLKKLMSQPSDEVQRAGLSPSVEQIEMLSHQLPNATLGDLVDLFL 176

Query: 321 HLCTVDDSLYFMCNTE 336
            +  +D   YFMC+ E
Sbjct: 177 DVAQLDGENYFMCDLE 192



 Score = 41.5 bits (93), Expect = 0.002
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 25/115 (21%)

Query: 338 FKFLAEMIQHVPLPLRARYVFCCAPINNKLPF-------VCATFLKMVRQYSRNEPITRN 390
           +++LAE+++ +PL +  +Y  C AP++            V    L + RQ SRN  ++ +
Sbjct: 237 YRYLAELVEGIPLTIWEQYSICQAPVSRNRTLSASVIVEVSVLTLPVSRQLSRNRTLSAS 296

Query: 391 WL------------------SGTVEWPLPSPRTILDLVHLESVFDVLELYLWLSY 427
            +                     V WP   P+++  L  +E+V +V ++YLWL Y
Sbjct: 297 VIVEFARRVSEKRETKVIDVKEMVRWPPVMPKSLKTLQDVEAVHEVCDVYLWLRY 351



 Score = 32.3 bits (70), Expect = 1.0
 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 412 LESVFDVLELYL-WLSYRFPDMFPDVKLVRDMETELDAII 450
           LE  F+  +L L + SYRFP++F D + +R+M+  ++ II
Sbjct: 363 LEIAFNPYQLLLLYYSYRFPEVFTDQENMREMQQFVEKII 402


>SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32)
          Length = 651

 Score = 36.3 bits (80), Expect = 0.062
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 14/81 (17%)

Query: 153 IVCFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGL 212
           I CF++ D   V+  +  RG + A  +  +PP             ES  +V+VAT A G+
Sbjct: 318 IYCFSRKDAEQVAIEMSSRGIKAACYHADMPP-------------ESRSQVVVATVAFGM 364

Query: 213 GINLS-IRRIIFYSLIKPVIN 232
           GI+ S +R +I +S  K + N
Sbjct: 365 GIDKSNVRFVIHHSFSKSMEN 385


>SB_26608| Best HMM Match : Serglycin (HMM E-Value=9.6)
          Length = 367

 Score = 36.3 bits (80), Expect = 0.062
 Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 463 NSEQMIRDE---DSGFAIGHGSKRVNKMLAGQSMGEEKGKLSE--LLVARGLITPQMLKK 517
           NS Q I DE   +    +GH  KR+ K L  Q  G  KGKL +   +  RG +T   +KK
Sbjct: 145 NSVQDIYDECRVEKLDCVGHVQKRMGKRLL-QLKGRRKGKLDDGHTIGGRGCLTEAKIKK 203

Query: 518 LQQE 521
           LQ+E
Sbjct: 204 LQKE 207


>SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)
          Length = 228

 Score = 36.3 bits (80), Expect = 0.062
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 198 ESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRY 257
           E   K + AT+   LG+N+  R ++F +  K     DG K+   I+  + +Q++GRAGR 
Sbjct: 60  EGLIKALFATETFALGLNMPARTVVFSNARK----FDG-KDFRFITSGEYIQMSGRAGRR 114

Query: 258 G 258
           G
Sbjct: 115 G 115


>SB_54840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 138 DTALGSLDNVQPGDCIVCFNKNDIYSVSRAIEQRGHEV 175
           D A   L+  QPGDCI  FN   ++  S +++ +G  V
Sbjct: 25  DQAYYPLNGQQPGDCI-AFNMRTVHGASESVDDQGRRV 61


>SB_47844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 175 VAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINL-SIRRIIFYSLIKPV--- 230
           V +++   P   K    + F+  + + ++++AT A G+G++   ++R+I Y   K V   
Sbjct: 321 VEMLHSCTPHANKQNILDSFSQQDGTVRLLIATIAFGMGVDCKGVKRVIHYGPSKSVEAY 380

Query: 231 INEDGEKEMD 240
           I E G    D
Sbjct: 381 IQETGRAGRD 390


>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
          Length = 490

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 150 GDCIV-CFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATD 208
           G C+V C  + +   ++  + + GH VA++ G +    ++A   +F   +   K+++ T+
Sbjct: 345 GQCVVFCHTRRNAAWLAEKMVKEGHAVALLSGEITIEQRIAVLERFRLGKE--KLLITTN 402

Query: 209 AIGLGINLSIRRIIFYSLIKPVINEDGEKEMD-VISISQALQIAGRAGRYGSA 260
               GI++          +  VIN D   +M         L   GR GR+G +
Sbjct: 403 VSARGIDV--------EQVTLVINYDMPMDMQGKADFETYLHRIGRTGRFGKS 447


>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 168  IEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKV-MVATDAIGLGINLSIRRIIFYSL 226
            +E  G++   I GS+    +    ++FN P S     +++T A GLGINL+    +F   
Sbjct: 997  LEGHGYKYERIDGSVNGAARQEAIDRFNAPTSQAFCFLLSTRAGGLGINLATADTVF--- 1053

Query: 227  IKPVINEDGEKEMDVISISQALQIAGRAGRYG 258
               + + D     D+ + S+A +I G+  + G
Sbjct: 1054 ---IYDSDWNPHNDIQAFSRAHRI-GQNNKVG 1081


>SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1726

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 4/116 (3%)

Query: 144 LDNVQPGDCIVCFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKV 203
           LD       + C +K  + +V   I +RG +   I G +P   +    ++F + + +C++
Sbjct: 336 LDGADNKFIVFCRHKLVMDAVVETIAKRGVKYIRIAGDVPSSVRGGMVHRFQE-DPTCRI 394

Query: 204 MV-ATDAIGLGINLSIR-RIIFYSL-IKPVINEDGEKEMDVISISQALQIAGRAGR 256
            V A +A   G+ L+   +++F  L   P +    E     I  + A+ I    GR
Sbjct: 395 AVLAIEAASFGLTLTAADQVVFAELHFTPGVLLQAEDRAHRIGQTNAVNIHYLVGR 450


>SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)
          Length = 556

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 160 DIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINL-SI 218
           DIY V     +     A+ +   P   +     +F    S  +V+VAT A+G+G+++  +
Sbjct: 271 DIYEVLSENVESKETYAMFHSKTPDSIQKEVLGEFIKSNSKIRVVVATCALGMGVDIPDV 330

Query: 219 RRIIFYSL 226
             II + +
Sbjct: 331 DHIIHFGI 338


>SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 271  PEDLATLKTLLSQPPEPVTQAGLHPTSEQMELYAYHLPHATLSSLM 316
            P  +A    L+++PP+P T+   HP  + +  + +  P  +LS+L+
Sbjct: 1177 PNVMAVHTMLINKPPDPGTKTSRHPLHQDLHYFPFR-PANSLSTLV 1221


>SB_56356| Best HMM Match : Helicase_C (HMM E-Value=1.3e-21)
          Length = 149

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 180 GSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLS 217
           GS P G++ +  ++FN+  S   +++ T   GLG+NL+
Sbjct: 62  GSTPAGSRHSIVHRFNNDPSIDVLLLTTHVGGLGLNLT 99


>SB_5686| Best HMM Match : Mur_ligase_C (HMM E-Value=1.1e-08)
          Length = 435

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 11/141 (7%)

Query: 79  GHVACTVEMTSLNNKCLQ-ADEIHLCGEAGAINLIEEICNTTGEVMEVRSYKRLTQLKVE 137
           G +A TV +T      +  A   H+ GE G     E+I    GE++E  S   +  L ++
Sbjct: 106 GEIAYTVGLTQPQVAIINNAGTAHV-GEFGGP---EKIVEAKGEILEGLSDSGVAVLNLD 161

Query: 138 DTALGSLDNVQPGDCIVCF----NKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANK 193
           D+A  +      G  I  F    +  D+Y+   A + RG     ++     G    Q N 
Sbjct: 162 DSAFATWQQRAEGRAISSFALRNSAADVYASELARDARGCSAFTLH--CADGQARIQLNL 219

Query: 194 FNDPESSCKVMVATDAIGLGI 214
             +   +  +  A  A+ LG+
Sbjct: 220 LGEHNVANALAAAAAALALGL 240


>SB_58300| Best HMM Match : AAA_5 (HMM E-Value=0)
          Length = 1736

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 191  ANKFNDPESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQI 250
            AN F DP+ + +  VA   +   +  +++  +    I+P+ NE  + + ++    Q L+ 
Sbjct: 1556 ANSF-DPKLAKRASVAAAPLAAWVRANVKFSVVLEKIEPLENEQAQLQRNLDKSQQRLEK 1614

Query: 251  AGRA 254
             GRA
Sbjct: 1615 LGRA 1618


>SB_908| Best HMM Match : DUF1682 (HMM E-Value=3.1e-38)
          Length = 326

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 221 IIFYSLIKPVINEDGEKEMD----VISISQALQIAGRAGRYGSAWETGHVTSYRPEDLAT 276
           ++F+ L   ++ +DG+ E      ++  S++L      GR G       +   +  DL  
Sbjct: 33  LLFFGLYS-ILGDDGQAEEPQQGIMVKESESLYSLWCTGRTGCNGMLVELKLQKRHDLVN 91

Query: 277 LKTLLSQPPEPVTQAGLHPTSEQMELYAYHL-PHATLSSLMDIFVHLCT 324
           + + L +P +      +H T E+M+ + + + P  T+S +      L T
Sbjct: 92  VMSYLVKPVKDSITVTVHMTDEEMDNFVFAIVPKKTVSKMQKELQDLVT 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,085,953
Number of Sequences: 59808
Number of extensions: 754927
Number of successful extensions: 1625
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1613
Number of HSP's gapped (non-prelim): 21
length of query: 539
length of database: 16,821,457
effective HSP length: 86
effective length of query: 453
effective length of database: 11,677,969
effective search space: 5290119957
effective search space used: 5290119957
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)