Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000880-TA|BGIBMGA000880-PA|IPR001650|Helicase,
C-terminal
(539 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014297-48|AAF52149.2| 758|Drosophila melanogaster CG9791-PA, ... 654 0.0
AY058527-1|AAL13756.1| 499|Drosophila melanogaster LD23445p pro... 614 e-176
AY061315-1|AAL28863.1| 1197|Drosophila melanogaster LD23303p pro... 36 0.11
AJ276896-1|CAC35050.1| 1197|Drosophila melanogaster putative hel... 36 0.11
AE014297-3389|AAF56187.2| 1197|Drosophila melanogaster CG10210-P... 36 0.11
AF145638-1|AAD38613.1| 1055|Drosophila melanogaster l.2.35Df pro... 36 0.19
AE014134-2631|AAF53481.1| 1055|Drosophila melanogaster CG4152-PA... 36 0.19
L76559-1|AAB67306.1| 2059|Drosophila melanogaster Mus308 protein. 34 0.57
BT021359-1|AAX33507.1| 2059|Drosophila melanogaster LP14642p pro... 34 0.57
AE014297-1578|AAF54858.1| 2059|Drosophila melanogaster CG6019-PA... 34 0.57
AF005239-1|AAC23709.1| 460|Drosophila melanogaster DEAD-box hel... 33 1.3
AF007780-1|AAB87384.1| 1518|Drosophila melanogaster CHD3 protein. 32 2.3
AE014296-3147|AAF49162.2| 892|Drosophila melanogaster CG9594-PA... 32 2.3
AY121677-1|AAM52004.1| 507|Drosophila melanogaster RE27528p pro... 30 9.3
AE014134-3342|AAF53963.1| 507|Drosophila melanogaster CG9253-PA... 30 9.3
>AE014297-48|AAF52149.2| 758|Drosophila melanogaster CG9791-PA,
isoform A protein.
Length = 758
Score = 654 bits (1615), Expect = 0.0
Identities = 318/521 (61%), Positives = 397/521 (76%), Gaps = 9/521 (1%)
Query: 1 MERFLKSKSGVYCGPLKLLATEIYHKSNKSGTPCDLVTGEERRHASLYNTLINGTDDNDI 60
MER+L +K+GVYCGPLKLLATE+Y+K+N+ GTPCDLVTGEER+ + N
Sbjct: 205 MERYLSAKTGVYCGPLKLLATEVYNKANERGTPCDLVTGEERKFGISESLPANHVACTVE 264
Query: 61 ETSDVEPYXXXXXXXXPSGHVACTVEMTSLNNKCLQADEIHLCGEAGAINLIEEICNTTG 120
TS PY + L ADE+H+CGE GA++L+++IC TTG
Sbjct: 265 MTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEPGALDLLQKICETTG 324
Query: 121 EVMEVRSYKRLTQLKVEDTALGSLDNVQPGDCIVCFNKNDIYSVSRAIEQRGHEVAVIYG 180
E +EVR Y RLT+L VE+TALGSLDN+ PGDCIVCF+K+DIY+VSR IE RG EVAVIYG
Sbjct: 325 ETVEVRLYDRLTELTVENTALGSLDNIVPGDCIVCFSKHDIYTVSREIEARGKEVAVIYG 384
Query: 181 SLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMD 240
LPPGTKLAQA KFNDP +SCKVMVATDAIG+G+NLSIRRIIFYSLIKP +NE GE+E+D
Sbjct: 385 GLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSLIKPSMNERGEREID 444
Query: 241 VISISQALQIAGRAGRYGSAWETGHVTSYRPEDLATLKTLLSQPPEPVTQAGLHPTSEQM 300
IS+S ALQIAGRAGR+ + WE G+VT+++ EDL TL+ +L++ PEP+ QAGLHPT++Q+
Sbjct: 445 TISVSSALQIAGRAGRFRTQWEHGYVTAFKSEDLQTLQRILARTPEPIKQAGLHPTADQI 504
Query: 301 ELYAYHLPHATLSSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEMIQHVPLPLRARYVFCC 360
ELYAYHLP ++LS+LMDIFV+LCTVDDSLYFMCN E FKFLAEMIQHV LPLRARYVFCC
Sbjct: 505 ELYAYHLPSSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHVALPLRARYVFCC 564
Query: 361 APINNKLPFVCATFLKMVRQYSRNEPITRNWLSGTVEWPLPSPRTILDLVHLESVFDVLE 420
APIN K+PFVC+ FLK+ RQYSRNEPIT +++ WP P+TILDLVHLE+VFDV++
Sbjct: 565 APINRKMPFVCSMFLKVARQYSRNEPITFDFIKKNCGWPFKLPKTILDLVHLEAVFDVMD 624
Query: 421 LYLWLSYRFPDMFPDVKLVRDMETELDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHG 480
L YRF D+FP+ VRD + ELD IIQQG+FQITRLL+N+E E S +AI
Sbjct: 625 L-----YRFMDLFPEAAYVRDAQKELDEIIQQGVFQITRLLKNTEASQDGETSNYAI--- 676
Query: 481 SKRVNKMLAGQSMGEEKGKLSELLVARGLITPQMLKKLQQE 521
+R+ + + +G+L+E L+A+GL+TP ML +L++E
Sbjct: 677 -RRITHVKEPRLPSLSRGRLTERLLAQGLLTPGMLSELRKE 716
>AY058527-1|AAL13756.1| 499|Drosophila melanogaster LD23445p
protein.
Length = 499
Score = 614 bits (1517), Expect = e-176
Identities = 285/427 (66%), Positives = 354/427 (82%), Gaps = 4/427 (0%)
Query: 95 LQADEIHLCGEAGAINLIEEICNTTGEVMEVRSYKRLTQLKVEDTALGSLDNVQPGDCIV 154
L ADE+H+CGE GA++L+++IC TTGE +EVR Y RLT+L VE+TALGSLDN+ PGDCIV
Sbjct: 35 LIADEVHVCGEPGALDLLQKICETTGETVEVRLYDRLTELTVENTALGSLDNIVPGDCIV 94
Query: 155 CFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGI 214
CF+K+DIY+VSR IE RG EVAVIYG LPPGTKLAQA KFNDP +SCKVMVATDAIG+G+
Sbjct: 95 CFSKHDIYTVSREIEARGKEVAVIYGGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGL 154
Query: 215 NLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYGSAWETGHVTSYRPEDL 274
NLSIRRIIFYSLIKP +NE GE+E+D IS+S ALQIAGRAGR+ + WE G+VT+++ EDL
Sbjct: 155 NLSIRRIIFYSLIKPSMNERGEREIDTISVSSALQIAGRAGRFRTQWEHGYVTAFKSEDL 214
Query: 275 ATLKTLLSQPPEPVTQAGLHPTSEQMELYAYHLPHATLSSLMDIFVHLCTVDDSLYFMCN 334
TL+ +L++ PEP+ QAGLHPT++Q+ELYAYHLP ++LS+LMDIFV+LCTVDDSLYFMCN
Sbjct: 215 QTLQRILARTPEPIKQAGLHPTADQIELYAYHLPSSSLSNLMDIFVNLCTVDDSLYFMCN 274
Query: 335 TEGFKFLAEMIQHVPLPLRARYVFCCAPINNKLPFVCATFLKMVRQYSRNEPITRNWLSG 394
E FKFLAEMIQHV LPLRARYVFCCAPIN K+PFVC+ FLK+ RQYSRNEPIT +++
Sbjct: 275 IEDFKFLAEMIQHVALPLRARYVFCCAPINRKMPFVCSMFLKVARQYSRNEPITFDFIKK 334
Query: 395 TVEWPLPSPRTILDLVHLESVFDVLELYLWLSYRFPDMFPDVKLVRDMETELDAIIQQGI 454
WP P+TILDLVHLE+VFDV++LYLWLSYRF D+FP+ VRD + ELD IIQQG+
Sbjct: 335 NCGWPFKLPKTILDLVHLEAVFDVMDLYLWLSYRFMDLFPEAAYVRDAQKELDEIIQQGV 394
Query: 455 FQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLAGQSMGEEKGKLSELLVARGLITPQM 514
FQITRLL+N+E E S +AI +R+ + + +G+L+E L+A+GL+TP M
Sbjct: 395 FQITRLLKNTEASQDGETSNYAI----RRITHVKEPRLPSLSRGRLTERLLAQGLLTPGM 450
Query: 515 LKKLQQE 521
L +L++E
Sbjct: 451 LSELRKE 457
>AY061315-1|AAL28863.1| 1197|Drosophila melanogaster LD23303p
protein.
Length = 1197
Score = 36.3 bits (80), Expect = 0.11
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 202 KVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYGSAW 261
K++ AT+ +G+N+ R ++F S K DG EM + + +Q+AGRAGR G
Sbjct: 607 KLLFATETFAMGVNMPARTVVFDSCKK----FDG-LEMRNLKPGEYIQMAGRAGRRGHD- 660
Query: 262 ETG 264
ETG
Sbjct: 661 ETG 663
>AJ276896-1|CAC35050.1| 1197|Drosophila melanogaster putative
helicase Ski2 protein.
Length = 1197
Score = 36.3 bits (80), Expect = 0.11
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 202 KVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYGSAW 261
K++ AT+ +G+N+ R ++F S K DG EM + + +Q+AGRAGR G
Sbjct: 607 KLLFATETFAMGVNMPARTVVFDSCKK----FDG-LEMRNLKPGEYIQMAGRAGRRGHD- 660
Query: 262 ETG 264
ETG
Sbjct: 661 ETG 663
>AE014297-3389|AAF56187.2| 1197|Drosophila melanogaster CG10210-PA
protein.
Length = 1197
Score = 36.3 bits (80), Expect = 0.11
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 202 KVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYGSAW 261
K++ AT+ +G+N+ R ++F S K DG EM + + +Q+AGRAGR G
Sbjct: 607 KLLFATETFAMGVNMPARTVVFDSCKK----FDG-LEMRNLKPGEYIQMAGRAGRRGHD- 660
Query: 262 ETG 264
ETG
Sbjct: 661 ETG 663
>AF145638-1|AAD38613.1| 1055|Drosophila melanogaster l.2.35Df
protein.
Length = 1055
Score = 35.5 bits (78), Expect = 0.19
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 198 ESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRY 257
E K + AT+ +G+N+ R ++F + K DG K+ IS + +Q+AGRAGR
Sbjct: 489 EGLIKALFATETFAMGLNMPARTVLFTAPRK----FDG-KKFRWISSGEYIQMAGRAGRR 543
Query: 258 G 258
G
Sbjct: 544 G 544
>AE014134-2631|AAF53481.1| 1055|Drosophila melanogaster CG4152-PA
protein.
Length = 1055
Score = 35.5 bits (78), Expect = 0.19
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 198 ESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRY 257
E K + AT+ +G+N+ R ++F + K DG K+ IS + +Q+AGRAGR
Sbjct: 489 EGLIKALFATETFAMGLNMPARTVLFTAPRK----FDG-KKFRWISSGEYIQMAGRAGRR 543
Query: 258 G 258
G
Sbjct: 544 G 544
>L76559-1|AAB67306.1| 2059|Drosophila melanogaster Mus308 protein.
Length = 2059
Score = 33.9 bits (74), Expect = 0.57
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 202 KVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGR 256
KV+VAT + G+NL RR++ S P+ G K+M ++ Q + AGR G+
Sbjct: 569 KVLVATSTLSSGVNLPARRVLIRS---PLF---GGKQMSSLTYRQMIGRAGRMGK 617
>BT021359-1|AAX33507.1| 2059|Drosophila melanogaster LP14642p
protein.
Length = 2059
Score = 33.9 bits (74), Expect = 0.57
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 202 KVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGR 256
KV+VAT + G+NL RR++ S P+ G K+M ++ Q + AGR G+
Sbjct: 569 KVLVATSTLSSGVNLPARRVLIRS---PLF---GGKQMSSLTYRQMIGRAGRMGK 617
>AE014297-1578|AAF54858.1| 2059|Drosophila melanogaster CG6019-PA
protein.
Length = 2059
Score = 33.9 bits (74), Expect = 0.57
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 202 KVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGR 256
KV+VAT + G+NL RR++ S P+ G K+M ++ Q + AGR G+
Sbjct: 569 KVLVATSTLSSGVNLPARRVLIRS---PLF---GGKQMSSLTYRQMIGRAGRMGK 617
>AF005239-1|AAC23709.1| 460|Drosophila melanogaster DEAD-box
helicase protein.
Length = 460
Score = 32.7 bits (71), Expect = 1.3
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 153 IVCFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGL 212
I C K ++ + GH VAV+ G L +L ++F KV++ T+ +
Sbjct: 319 IFCHTKRTAAWLAAKMTSDGHSVAVLTGDLTVVQRLDVLDRFRSGLE--KVLITTNILSR 376
Query: 213 GINLSIRRIIFYSLIKPVINEDGEKEMDVISISQA-LQIAGRAGRYGSA 260
GI++ ++ V+N D ++D ++ + L GR GR+G +
Sbjct: 377 GIDI--------EQLQVVVNFDLPVDLDGMADCETYLHRIGRTGRFGKS 417
>AF007780-1|AAB87384.1| 1518|Drosophila melanogaster CHD3 protein.
Length = 1518
Score = 31.9 bits (69), Expect = 2.3
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 168 IEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKV-MVATDAIGLGINLS 217
+E G++ I GS+ + ++FNDP S V +++T A GLGINL+
Sbjct: 625 LEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLA 675
>AE014296-3147|AAF49162.2| 892|Drosophila melanogaster CG9594-PA
protein.
Length = 892
Score = 31.9 bits (69), Expect = 2.3
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 168 IEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKV-MVATDAIGLGINLS 217
+E G++ I GS+ + ++FNDP S V +++T A GLGINL+
Sbjct: 622 LEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLA 672
>AY121677-1|AAM52004.1| 507|Drosophila melanogaster RE27528p
protein.
Length = 507
Score = 29.9 bits (64), Expect = 9.3
Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 114 EICNTTGEVMEVRSYKRLTQLKVEDTALGSLDNVQPGDCIVCFNKNDIYSVSRAIEQRGH 173
E+ N V +++ +K +D L + N G+ + F +V A+ R
Sbjct: 264 EVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRAL 323
Query: 174 EVAVI--YGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINL 216
+A I +G + +LA NKF S ++++TD G+++
Sbjct: 324 GLAAIPLHGQMSQNKRLAALNKFKAKNRS--ILISTDVASRGLDI 366
>AE014134-3342|AAF53963.1| 507|Drosophila melanogaster CG9253-PA
protein.
Length = 507
Score = 29.9 bits (64), Expect = 9.3
Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 114 EICNTTGEVMEVRSYKRLTQLKVEDTALGSLDNVQPGDCIVCFNKNDIYSVSRAIEQRGH 173
E+ N V +++ +K +D L + N G+ + F +V A+ R
Sbjct: 264 EVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRAL 323
Query: 174 EVAVI--YGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINL 216
+A I +G + +LA NKF S ++++TD G+++
Sbjct: 324 GLAAIPLHGQMSQNKRLAALNKFKAKNRS--ILISTDVASRGLDI 366
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,188,114
Number of Sequences: 52641
Number of extensions: 1113472
Number of successful extensions: 2616
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2599
Number of HSP's gapped (non-prelim): 22
length of query: 539
length of database: 24,830,863
effective HSP length: 88
effective length of query: 451
effective length of database: 20,198,455
effective search space: 9109503205
effective search space used: 9109503205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
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