Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000880-TA|BGIBMGA000880-PA|IPR001650|Helicase,
C-terminal
(539 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical pr... 416 e-116
Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical pr... 416 e-116
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr... 38 0.014
Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical pr... 37 0.031
U80029-9|AAB37588.1| 459|Caenorhabditis elegans Hypothetical pr... 35 0.17
U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical p... 34 0.22
U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical p... 34 0.22
AF036702-14|AAB88378.2| 396|Caenorhabditis elegans Hypothetical... 34 0.29
AF036702-13|AAB88379.2| 648|Caenorhabditis elegans Hypothetical... 34 0.29
Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical pr... 33 0.38
Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical pr... 33 0.38
AC024819-4|AAU20828.1| 469|Caenorhabditis elegans Hypothetical ... 33 0.38
AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical ... 33 0.38
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 33 0.38
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 33 0.67
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 33 0.67
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 33 0.67
Z68880-1|CAA93098.1| 652|Caenorhabditis elegans Hypothetical pr... 30 3.6
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr... 30 3.6
AY349016-1|AAQ55496.1| 394|Caenorhabditis elegans NHR-41 protein. 30 3.6
AY349015-1|AAQ55495.1| 459|Caenorhabditis elegans NHR-41B protein. 30 3.6
AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein. 30 3.6
Z81069-5|CAB02995.1| 504|Caenorhabditis elegans Hypothetical pr... 30 4.7
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 29 6.3
U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug resis... 29 8.3
U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug resis... 29 8.3
U13643-6|AAL56620.1| 180|Caenorhabditis elegans Hypothetical pr... 29 8.3
>Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical
protein C08F8.2b protein.
Length = 719
Score = 416 bits (1025), Expect = e-116
Identities = 218/531 (41%), Positives = 322/531 (60%), Gaps = 20/531 (3%)
Query: 1 MERFLKSKSGVYCGPLKLLATEIYHKSNKSGTPCDLVTGEERRHASLYN---TLINGTDD 57
++RF ++KS V+CGPLKLLA E++H++N+ G PCDLVTGEERR A + ++ T +
Sbjct: 205 LKRFGEAKSAVFCGPLKLLAAEVFHRTNELGIPCDLVTGEERRFAKDNHHPSQHLSSTVE 264
Query: 58 NDIETSDVEPYXXXXXXXXPSGHVACTVEMTSLNNKCLQADEIHLCGEAGAINLIEEICN 117
VE L ADEIHLCGE AI++++++
Sbjct: 265 MLSTQMRVEVAVIDEIQMLRDEQRGWAWTRALLG---AAADEIHLCGEPAAIDIVKKLLE 321
Query: 118 TTGEVMEVRSYKRLTQLKVEDTALGSLDNVQPGDCIVCFNKNDIYSVSRAIEQRGHEVAV 177
GE +EVR Y+R + L + D A+ S N++PGDCIVCF+K I+ S+ +E+ G + AV
Sbjct: 322 PIGETVEVRYYERKSPLAIADKAIESYSNIEPGDCIVCFSKRSIFFNSKKLEENGIKPAV 381
Query: 178 IYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEK 237
IYG LPPGTKLAQA KFNDP+ C V+VATDAIG+G+NL+IRR+IF S +
Sbjct: 382 IYGDLPPGTKLAQAAKFNDPDDECNVLVATDAIGMGLNLNIRRVIFNSC---------TR 432
Query: 238 EMDVISISQALQIAGRAGRYGSAWETGHVTSYRPEDLATLKTLLSQPPEPVTQAGLHPTS 297
+ +++ ALQIAGRAGR+G+A+ G T+ R EDL TLK +LS+ EP+ G+ PT
Sbjct: 433 QTELLPTYAALQIAGRAGRFGTAYANGVATTMRKEDLGTLKAILSEKIEPIANVGIAPTY 492
Query: 298 EQMELYAYHLPHATLSSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEMIQHVPLPLRARYV 357
+Q+E +++HLP A+ L+D+FV +C+V D +F+C + LA +I +PLPL+ RY
Sbjct: 493 DQIETFSFHLPQASFVRLLDLFVSVCSVSDH-FFICTVYDMRELAVLIDQIPLPLKVRYT 551
Query: 358 FCCAPINNKLPFVCATFLKMVRQYSRNEPITRNWLSGTVEWPLPSPRTIL-DLVHLESVF 416
FC +P+N + A F+KM R++S + +T WL +EWP P P T L +L LE +
Sbjct: 552 FCTSPLNTEDKRTSAVFVKMARRFSTGQALTYEWLIDMLEWP-PKPATTLNELSLLEQNY 610
Query: 417 DVLELYLWLSYRFPDMFPDVKLVRDMETELDAIIQQGIFQITRLLRNSEQMIRDEDSGFA 476
++L+ Y+WLS RFPDM PD VR+ LD++IQ+G+ LL S + +G +
Sbjct: 611 EILDQYMWLSMRFPDMLPDEPRVREASKHLDSMIQEGVESFMSLL--SVGATESKAAGSS 668
Query: 477 IGHGSKRVNKMLAGQSMGEEKGKLSELLVARGLITPQMLKKLQQELSTDKK 527
KR N + + ++ + E L+ R I+ L++L++EL+ +KK
Sbjct: 669 KSSEGKRENPSKSEREKPNKRSSILEALLKRADISEDDLEQLREELNKNKK 719
>Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical
protein C08F8.2a protein.
Length = 721
Score = 416 bits (1025), Expect = e-116
Identities = 218/531 (41%), Positives = 322/531 (60%), Gaps = 20/531 (3%)
Query: 1 MERFLKSKSGVYCGPLKLLATEIYHKSNKSGTPCDLVTGEERRHASLYN---TLINGTDD 57
++RF ++KS V+CGPLKLLA E++H++N+ G PCDLVTGEERR A + ++ T +
Sbjct: 207 LKRFGEAKSAVFCGPLKLLAAEVFHRTNELGIPCDLVTGEERRFAKDNHHPSQHLSSTVE 266
Query: 58 NDIETSDVEPYXXXXXXXXPSGHVACTVEMTSLNNKCLQADEIHLCGEAGAINLIEEICN 117
VE L ADEIHLCGE AI++++++
Sbjct: 267 MLSTQMRVEVAVIDEIQMLRDEQRGWAWTRALLG---AAADEIHLCGEPAAIDIVKKLLE 323
Query: 118 TTGEVMEVRSYKRLTQLKVEDTALGSLDNVQPGDCIVCFNKNDIYSVSRAIEQRGHEVAV 177
GE +EVR Y+R + L + D A+ S N++PGDCIVCF+K I+ S+ +E+ G + AV
Sbjct: 324 PIGETVEVRYYERKSPLAIADKAIESYSNIEPGDCIVCFSKRSIFFNSKKLEENGIKPAV 383
Query: 178 IYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEK 237
IYG LPPGTKLAQA KFNDP+ C V+VATDAIG+G+NL+IRR+IF S +
Sbjct: 384 IYGDLPPGTKLAQAAKFNDPDDECNVLVATDAIGMGLNLNIRRVIFNSC---------TR 434
Query: 238 EMDVISISQALQIAGRAGRYGSAWETGHVTSYRPEDLATLKTLLSQPPEPVTQAGLHPTS 297
+ +++ ALQIAGRAGR+G+A+ G T+ R EDL TLK +LS+ EP+ G+ PT
Sbjct: 435 QTELLPTYAALQIAGRAGRFGTAYANGVATTMRKEDLGTLKAILSEKIEPIANVGIAPTY 494
Query: 298 EQMELYAYHLPHATLSSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEMIQHVPLPLRARYV 357
+Q+E +++HLP A+ L+D+FV +C+V D +F+C + LA +I +PLPL+ RY
Sbjct: 495 DQIETFSFHLPQASFVRLLDLFVSVCSVSDH-FFICTVYDMRELAVLIDQIPLPLKVRYT 553
Query: 358 FCCAPINNKLPFVCATFLKMVRQYSRNEPITRNWLSGTVEWPLPSPRTIL-DLVHLESVF 416
FC +P+N + A F+KM R++S + +T WL +EWP P P T L +L LE +
Sbjct: 554 FCTSPLNTEDKRTSAVFVKMARRFSTGQALTYEWLIDMLEWP-PKPATTLNELSLLEQNY 612
Query: 417 DVLELYLWLSYRFPDMFPDVKLVRDMETELDAIIQQGIFQITRLLRNSEQMIRDEDSGFA 476
++L+ Y+WLS RFPDM PD VR+ LD++IQ+G+ LL S + +G +
Sbjct: 613 EILDQYMWLSMRFPDMLPDEPRVREASKHLDSMIQEGVESFMSLL--SVGATESKAAGSS 670
Query: 477 IGHGSKRVNKMLAGQSMGEEKGKLSELLVARGLITPQMLKKLQQELSTDKK 527
KR N + + ++ + E L+ R I+ L++L++EL+ +KK
Sbjct: 671 KSSEGKRENPSKSEREKPNKRSSILEALLKRADISEDDLEQLREELNKNKK 721
>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical
protein F01G4.3 protein.
Length = 1266
Score = 38.3 bits (85), Expect = 0.014
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 202 KVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYG 258
K++ AT+ +G+N+ R ++F S++K DG E +++ + Q+AGRAGR G
Sbjct: 653 KILFATETFAMGVNMPARCVVFDSIMK----HDG-TERRMLNPGEYTQMAGRAGRRG 704
>Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical
protein W08D2.7 protein.
Length = 1026
Score = 37.1 bits (82), Expect = 0.031
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 198 ESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRY 257
E KV+ AT+ +G+N+ R ++F S K DG + S + +Q+AGRAGR
Sbjct: 460 EGLVKVLFATETFSMGLNMPARTVVFTSARK----FDGSDNRYITS-GEYIQMAGRAGRR 514
Query: 258 G 258
G
Sbjct: 515 G 515
>U80029-9|AAB37588.1| 459|Caenorhabditis elegans Hypothetical
protein T20D4.9 protein.
Length = 459
Score = 34.7 bits (76), Expect = 0.17
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 18/137 (13%)
Query: 77 PSGHVACTVEMTSLNNKCLQADEIHLCGEAGAINLI----------EEICNTTG--EVME 124
PSG T +T NKC Q DE+ + G++ A+ I E++ N G VM+
Sbjct: 286 PSGTELLTPNVTKAANKCTQ-DEVKMMGDSDAVKPIDGWFSKKVTHEDLANIMGLRMVMK 344
Query: 125 VRSYKRLT--QLK-VEDTALGSL-DNVQPGDCIVCFNKNDIYSVSRAIEQRGHEVAVIYG 180
+ + K + QLK +T LG L +P + I+ + S++ A+ Q + +YG
Sbjct: 345 MAAKKSVNEEQLKNALETILGGLCIQGKPKNSILPHHHPFEISINTAVRQY-PLFSSLYG 403
Query: 181 SLPPGTKLAQANKFNDP 197
P A+A KF +P
Sbjct: 404 CRPGDRMFAEAEKFCNP 420
>U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical
protein K02F3.12b protein.
Length = 608
Score = 34.3 bits (75), Expect = 0.22
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 153 IVCFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGL 212
I C ++ND V++A++ G + + + P + + +V+VAT A G+
Sbjct: 314 IYCLSRNDCEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGW--ISGKIQVIVATVAFGM 371
Query: 213 GINL-SIRRIIFYSLIKPVIN 232
GI+ ++R +I +SL K + N
Sbjct: 372 GIDKPNVRFVIHHSLPKSIEN 392
>U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical
protein K02F3.12a protein.
Length = 631
Score = 34.3 bits (75), Expect = 0.22
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 153 IVCFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGL 212
I C ++ND V++A++ G + + + P + + +V+VAT A G+
Sbjct: 337 IYCLSRNDCEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGW--ISGKIQVIVATVAFGM 394
Query: 213 GINL-SIRRIIFYSLIKPVIN 232
GI+ ++R +I +SL K + N
Sbjct: 395 GIDKPNVRFVIHHSLPKSIEN 415
>AF036702-14|AAB88378.2| 396|Caenorhabditis elegans Hypothetical
protein F33D4.6a protein.
Length = 396
Score = 33.9 bits (74), Expect = 0.29
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 228 KPVINEDGEKEMDVISISQALQIAGRAGRYGSAWETGHVTSYRP--EDLATLKTLLSQPP 285
+P + + D+ SIS+ + G A R A + P E + TL L+ PP
Sbjct: 146 RPSVAAKADDNEDIFSISRLISATGNAIREAQAAQAAQKPQQTPQQEPMITLPPLVPLPP 205
Query: 286 EPVTQAGLH-PTS 297
P+ LH PT+
Sbjct: 206 VPLQMPALHIPTT 218
>AF036702-13|AAB88379.2| 648|Caenorhabditis elegans Hypothetical
protein F33D4.6b protein.
Length = 648
Score = 33.9 bits (74), Expect = 0.29
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 228 KPVINEDGEKEMDVISISQALQIAGRAGRYGSAWETGHVTSYRP--EDLATLKTLLSQPP 285
+P + + D+ SIS+ + G A R A + P E + TL L+ PP
Sbjct: 146 RPSVAAKADDNEDIFSISRLISATGNAIREAQAAQAAQKPQQTPQQEPMITLPPLVPLPP 205
Query: 286 EPVTQAGLH-PTS 297
P+ LH PT+
Sbjct: 206 VPLQMPALHIPTT 218
>Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical protein
F15D4.1 protein.
Length = 1529
Score = 33.5 bits (73), Expect = 0.38
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 177 VIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLS 217
V+ GS+P G ++ N+FN+ ++ +++ T G+G+NL+
Sbjct: 1353 VLDGSVPAGDRMKMVNRFNEDKTIDVLILTTHVGGVGLNLT 1393
>Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical protein
F15D4.1 protein.
Length = 1529
Score = 33.5 bits (73), Expect = 0.38
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 177 VIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLS 217
V+ GS+P G ++ N+FN+ ++ +++ T G+G+NL+
Sbjct: 1353 VLDGSVPAGDRMKMVNRFNEDKTIDVLILTTHVGGVGLNLT 1393
>AC024819-4|AAU20828.1| 469|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3b protein.
Length = 469
Score = 33.5 bits (73), Expect = 0.38
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 203 VMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYG 258
V+ AT + G+NL +RR+I + P++ + + +Q LQ+AGRAGR G
Sbjct: 39 VVCATSTLAAGVNLPVRRVIIKA---PMVGRER------LGKAQYLQMAGRAGRAG 85
>AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3a protein.
Length = 923
Score = 33.5 bits (73), Expect = 0.38
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 203 VMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYG 258
V+ AT + G+NL +RR+I + P++ + + +Q LQ+AGRAGR G
Sbjct: 493 VVCATSTLAAGVNLPVRRVIIKA---PMVGRER------LGKAQYLQMAGRAGRAG 539
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 33.5 bits (73), Expect = 0.38
Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 23/157 (14%)
Query: 104 GEAGAINLIEEICNTTGEVMEVRSYKRLTQLKVEDTALGSLDNVQPGDCIVCFNKNDIYS 163
G AGA +L N E+ VRS +L ++ L L P I K D+ +
Sbjct: 408 GRAGAASL-----NVLQELEFVRSENKLVRV------LECLQKTSPKVLIFAEKKVDVDN 456
Query: 164 VSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLSIRRIIF 223
+ + +G EVA I+G + A F E V+VATD G++
Sbjct: 457 IYEYLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKD--VLVATDVASKGLD-------- 506
Query: 224 YSLIKPVINEDGEKEMDVISISQALQIAGRAGRYGSA 260
+ I+ VIN D + D+ + + GR+GR G A
Sbjct: 507 FQGIEHVINFDMPE--DIENYVHRIGRTGRSGRKGLA 541
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 32.7 bits (71), Expect = 0.67
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 153 IVCFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANK-FNDPESSCKVMVATDAIG 211
I C K + + + RGH+V V++G + T + +A+ + KV++ T+
Sbjct: 460 IFCHTKASVMWLYENMRARGHQVDVLHGDM---TVVERADTIIHFKRGDFKVLITTNVFA 516
Query: 212 LGINLS-IRRIIFYSLIKPVINEDGEKEMDVISISQA-----LQIAGRAGRYG 258
GI+++ + +I Y L P+ D M V +Q L GR GR+G
Sbjct: 517 RGIDVAQVSVVINYDL--PIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFG 567
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 32.7 bits (71), Expect = 0.67
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 153 IVCFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANK-FNDPESSCKVMVATDAIG 211
I C K + + + RGH+V V++G + T + +A+ + KV++ T+
Sbjct: 485 IFCHTKASVMWLYENMRARGHQVDVLHGDM---TVVERADTIIHFKRGDFKVLITTNVFA 541
Query: 212 LGINLS-IRRIIFYSLIKPVINEDGEKEMDVISISQA-----LQIAGRAGRYG 258
GI+++ + +I Y L P+ D M V +Q L GR GR+G
Sbjct: 542 RGIDVAQVSVVINYDL--PIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFG 592
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 32.7 bits (71), Expect = 0.67
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 153 IVCFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANK-FNDPESSCKVMVATDAIG 211
I C K + + + RGH+V V++G + T + +A+ + KV++ T+
Sbjct: 869 IFCHTKASVMWLYENMRARGHQVDVLHGDM---TVVERADTIIHFKRGDFKVLITTNVFA 925
Query: 212 LGINLS-IRRIIFYSLIKPVINEDGEKEMDVISISQA-----LQIAGRAGRYG 258
GI+++ + +I Y L P+ D M V +Q L GR GR+G
Sbjct: 926 RGIDVAQVSVVINYDL--PIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFG 976
>Z68880-1|CAA93098.1| 652|Caenorhabditis elegans Hypothetical
protein T14G10.1 protein.
Length = 652
Score = 30.3 bits (65), Expect = 3.6
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 28 NKSGTPCDLVTGEERRHASLYNTLINGTDDNDIETSDVEPYXXXXXXXXPSGHVACTVEM 87
NK G PC + G+ RH N + D + ++ SG + +
Sbjct: 81 NKLGIPCYGLDGDNIRHGLCKNLGFSKEDRQE----NIRRVAEVAKLFADSGMICLAAFI 136
Query: 88 TSLNNKCLQADEIHLCGEAGAINLIEEICNTTGEVMEVRSYKRL 131
+ L A +IH E+ + IE +TT EV E R K+L
Sbjct: 137 SPFQEDRLDARKIH---ESENVKFIEVHVSTTLEVCEQRDPKQL 177
>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical protein
C32E12.4 protein.
Length = 1553
Score = 30.3 bits (65), Expect = 3.6
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 224 YSLIKPVINEDGEKEMDVI 242
Y +IKPVIN+D +K+MD I
Sbjct: 1132 YEVIKPVINDDFDKQMDEI 1150
>AY349016-1|AAQ55496.1| 394|Caenorhabditis elegans NHR-41 protein.
Length = 394
Score = 30.3 bits (65), Expect = 3.6
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 117 NTTGEVMEVRSYKRLTQLKVEDTALGSLDN-VQPGDCIVCFNKNDIYSVSRAIEQRGHEV 175
NTT E + L +L+ E T LG L+ ++PG ++ N D V R E G +
Sbjct: 23 NTTPEHLSPNLLLSLVKLEHE-TKLGGLEALIKPGSPVMLQNTQDYMDVKR--ESIGEDE 79
Query: 176 AVIYGSLPP 184
+ G +PP
Sbjct: 80 MTVIGLVPP 88
>AY349015-1|AAQ55495.1| 459|Caenorhabditis elegans NHR-41B protein.
Length = 459
Score = 30.3 bits (65), Expect = 3.6
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 117 NTTGEVMEVRSYKRLTQLKVEDTALGSLDN-VQPGDCIVCFNKNDIYSVSRAIEQRGHEV 175
NTT E + L +L+ E T LG L+ ++PG ++ N D V R E G +
Sbjct: 120 NTTPEHLSPNLLLSLVKLEHE-TKLGGLEALIKPGSPVMLQNTQDYMDVKR--ESIGEDE 176
Query: 176 AVIYGSLPP 184
+ G +PP
Sbjct: 177 MTVIGLVPP 185
>AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein.
Length = 583
Score = 30.3 bits (65), Expect = 3.6
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 117 NTTGEVMEVRSYKRLTQLKVEDTALGSLDN-VQPGDCIVCFNKNDIYSVSRAIEQRGHEV 175
NTT E + L +L+ E T LG L+ ++PG ++ N D V R E G +
Sbjct: 244 NTTPEHLSPNLLLSLVKLEHE-TKLGGLEALIKPGSPVMLQNTQDYMDVKR--ESIGEDE 300
Query: 176 AVIYGSLPP 184
+ G +PP
Sbjct: 301 MTVIGLVPP 309
>Z81069-5|CAB02995.1| 504|Caenorhabditis elegans Hypothetical
protein F25H9.5 protein.
Length = 504
Score = 29.9 bits (64), Expect = 4.7
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 197 PESSCKVMVATDAIGLGIN-LSIRRIIFYSLIKPV--INEDGEKEMDVISISQALQIAGR 253
PE +C +VAT G IN +++ S K + I + +KE D++ +++
Sbjct: 256 PERTCDSIVATTIFGKAINKKTVQEERLLSEWKNISKIGDKSKKEHDLL-----MELTQN 310
Query: 254 AGRYGSAWETGHV 266
+ YG+AW + H+
Sbjct: 311 SSCYGAAWFSAHI 323
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 29.5 bits (63), Expect = 6.3
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 148 QPGDCIVCFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVAT 207
QP I K +S+ + + G + V++G + E + ++VAT
Sbjct: 573 QPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALK--EGTSDILVAT 630
Query: 208 DAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYGSAWETGHVT 267
D G GI++ + V+N D K ++ + + GRAG++G A +T
Sbjct: 631 DVAGRGIDVKD--------VSLVLNYDMAKSIE--DYTHRIGRTGRAGKHGKA-----IT 675
Query: 268 SYRPEDLAT---LKTLLSQPP 285
P+D A LK +L + P
Sbjct: 676 FLTPDDTAVYFDLKQVLVESP 696
>U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug
resistance related protein2 protein.
Length = 1525
Score = 29.1 bits (62), Expect = 8.3
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 492 SMGEEKGKLSELLVARGLITPQMLKKLQQELSTDKKIDRT 531
S+G+ G++ E+L G + P +LK+L+ LS + + T
Sbjct: 853 SIGDGSGEVDEILRDLGQVKPGILKRLESHLSQESDKEDT 892
>U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug
resistance protein familyprotein 2 protein.
Length = 1525
Score = 29.1 bits (62), Expect = 8.3
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 492 SMGEEKGKLSELLVARGLITPQMLKKLQQELSTDKKIDRT 531
S+G+ G++ E+L G + P +LK+L+ LS + + T
Sbjct: 853 SIGDGSGEVDEILRDLGQVKPGILKRLESHLSQESDKEDT 892
>U13643-6|AAL56620.1| 180|Caenorhabditis elegans Hypothetical
protein T07E3.6b protein.
Length = 180
Score = 29.1 bits (62), Expect = 8.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 404 RTILDLVHLESVFDVLELYLWLSYRFPDMFPDVKLVRDMETEL 446
R I+ ++ L +VF + L YR P M+ DV+ V+ EL
Sbjct: 97 RFIISMIALLAVFCAVSTASPLLYRAPQMYDDVQFVKRSNAEL 139
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,249,655
Number of Sequences: 27539
Number of extensions: 566940
Number of successful extensions: 1283
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1257
Number of HSP's gapped (non-prelim): 38
length of query: 539
length of database: 12,573,161
effective HSP length: 85
effective length of query: 454
effective length of database: 10,232,346
effective search space: 4645485084
effective search space used: 4645485084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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