Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000880-TA|BGIBMGA000880-PA|IPR001650|Helicase,
C-terminal
(539 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39840.1 68418.m04828 ATP-dependent RNA helicase, mitochondri... 303 2e-82
At4g14790.1 68417.m02274 ATP-dependent RNA helicase, mitochondri... 265 4e-71
At1g60930.1 68414.m06858 DNA helicase, putative strong similarit... 45 1e-04
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 43 6e-04
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot... 40 0.004
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 39 0.007
At5g66750.1 68418.m08414 SNF2 domain-containing protein / helica... 38 0.022
At1g05480.1 68414.m00557 SNF2 domain-containing protein / helica... 37 0.029
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 36 0.068
At1g70070.1 68414.m08062 DEAD/DEAH box helicase, putative simila... 36 0.090
At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA he... 35 0.12
At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468... 35 0.16
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila... 34 0.21
At1g59760.1 68414.m06729 ATP-dependent RNA helicase, putative si... 34 0.21
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 34 0.21
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 33 0.36
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 32 1.1
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 31 1.5
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1... 31 1.9
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 31 2.5
At3g24660.1 68416.m03096 leucine-rich repeat transmembrane prote... 30 3.4
At3g22790.1 68416.m02873 kinase interacting family protein simil... 30 3.4
At5g45910.1 68418.m05646 GDSL-motif lipase/hydrolase family prot... 30 4.5
At1g61030.1 68414.m06871 expressed protein 29 5.9
At1g22410.1 68414.m02802 2-dehydro-3-deoxyphosphoheptonate aldol... 29 5.9
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 29 7.8
At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica... 29 7.8
>At5g39840.1 68418.m04828 ATP-dependent RNA helicase, mitochondrial,
putative similar to mitochondrial RNA helicase
[Arabidopsis thaliana] GI:5823579; contains Pfam profile
PF00271: Helicase conserved C-terminal domain
Length = 776
Score = 303 bits (743), Expect = 2e-82
Identities = 178/482 (36%), Positives = 274/482 (56%), Gaps = 23/482 (4%)
Query: 1 MERFLKSKSGVYCGPLKLLATEIYHKSNKSGTPCDLVTGEERRHASLYNTLINGTDD-ND 59
++RF+++K+G+YC PL+LLA E++ K N G C L+TG+E+++ N + + +
Sbjct: 292 LQRFMEAKNGLYCSPLRLLAMEVFDKVNALGIYCSLLTGQEKKYVPFANHVSCTVEMVST 351
Query: 60 IETSDVEPYXXXXXXXXPSGHVACTVEMTSLNNKCLQADEIHLCGEAGAINLIEEICNTT 119
E +V PS A T + L +ADEIHLCG+ ++++ ++C T
Sbjct: 352 DELYEVAVLDEIQMMADPSRGHAWTKALLGL-----KADEIHLCGDPSVLDIVRKMCADT 406
Query: 120 GEVMEVRSYKRLTQLKVE-DTALGSLDNVQPGDCIVCFNKNDIYSVSRAIEQR-GHEVAV 177
G+ + Y+R L VE T LG L NV+ GDC+V F++ +I+ V AIE+ H V
Sbjct: 407 GDELVEEHYERFKPLVVEAKTLLGELKNVKSGDCVVAFSRREIFEVKMAIEKHTNHRCCV 466
Query: 178 IYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEK 237
IYG+LPP T+ QA FND E+ V+VA+DA+G+G+NL+IRR++FYSL K +G+K
Sbjct: 467 IYGALPPETRRQQAKLFNDQENEYDVLVASDAVGMGLNLNIRRVVFYSLNK----YNGDK 522
Query: 238 EMDVISISQALQIAGRAGRYGSAWETGHVTSYRPEDLATLKTLLSQPPEPVTQAGLHPTS 297
+ V + SQ QIAGRAGR GS + G T+ EDL L L QP + VT+ GL P
Sbjct: 523 IVPV-AASQVKQIAGRAGRRGSRYPDGLTTTLHLEDLNYLIECLQQPFDEVTKVGLFPFF 581
Query: 298 EQMELYAYHLPHATLSSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEMIQHVP-LPLRARY 356
EQ+EL+A +P S+L++ F C +D S YF+C + K +A M++ V L L R+
Sbjct: 582 EQIELFAAQVPDMAFSNLLEHFGKHCRLDGS-YFLCRHDHVKKVANMLEKVEGLSLEDRF 640
Query: 357 VFCCAPINNKLPFVCATFLKMVRQYSRNEPITRNWLSGTVEWPLPSPRTILDLVHLESVF 416
FC AP+N + P + YS+N P+ N G P S ++ L+ LES
Sbjct: 641 NFCFAPVNIRNPRAMHNLYRFASSYSQNMPV--NVAMGI---PKSSAKSDAQLLDLESRH 695
Query: 417 DVLELYLWLSYRFPDMFPDVKLVRDMETELDAIIQQGIFQITRLLRNSEQMIR---DEDS 473
+L +YLWLS +F + FP V+ V M T + ++ + + + + + + E+ ++ ED
Sbjct: 696 QILSMYLWLSNQFEENFPFVEKVEAMATNIAELLGESLSKASWKMESKEEKVKGQMKEDR 755
Query: 474 GF 475
G+
Sbjct: 756 GY 757
>At4g14790.1 68417.m02274 ATP-dependent RNA helicase, mitochondrial
(SUV3) identical to mitochondrial RNA helicase
[Arabidopsis thaliana] GI:5823579; contains Pfam profile
PF00271: Helicase conserved C-terminal domain
Length = 571
Score = 265 bits (650), Expect = 4e-71
Identities = 157/452 (34%), Positives = 248/452 (54%), Gaps = 21/452 (4%)
Query: 6 KSKSGVYCGPLKLLATEIYHKSNKSGTPCDLVTGEERRHASLYNTLINGTDDN--DIETS 63
+S SGVYCGPL+LLA E+ + NK+ PCDL+TG+E+ L+ G +E +
Sbjct: 112 QSSSGVYCGPLRLLAWEVAKRLNKANVPCDLITGQEK-------DLVEGATHKAVTVEMA 164
Query: 64 DVEPYXXXXXXXXPSGHVACTVEMTSLNNKCL--QADEIHLCGEAGAINLIEEICNTTGE 121
DV V C + L ADE+HLCG+ + L+E+I TG+
Sbjct: 165 DVTSVYDCAIIDEIQ-MVGCKQRGFAFTRALLGIAADELHLCGDPAVVPLVEDILKVTGD 223
Query: 122 VMEVRSYKRLTQLKVEDTALGSLDNVQPGDCIVCFNKNDIYSVSRAIEQRG-HEVAVIYG 180
+EV +Y+RL+ L + S+ +++ GDC+V F++ DIY+ + IE+ G H +V+YG
Sbjct: 224 DVEVHTYERLSPLVPLKVPVSSVSSIKTGDCLVTFSRKDIYAYKKTIERAGKHLCSVVYG 283
Query: 181 SLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMD 240
SLPP T+ AQA +FND + V+VA+DAIG+G+NL+I RIIF +L K DG + D
Sbjct: 284 SLPPETRTAQATRFNDETNDFDVLVASDAIGMGLNLNISRIIFSTLQK----YDGSETRD 339
Query: 241 VISISQALQIAGRAGRYGSAWETGHVTSYRPEDLATLKTLLSQPPEPVTQAGLHPTSEQM 300
+++S+ QIAGRAGR+ S + G VT EDL L + L P + +AGL PT + +
Sbjct: 340 -LTVSEIKQIAGRAGRFQSKFPIGEVTCLHKEDLPLLHSSLKSPSPILERAGLFPTFDLL 398
Query: 301 ELYAYHLPHATLSSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEMIQHVPLPLRARYVFCC 360
Y+ P L +++ FV + S YF+ N E +A ++ +PL L+ +Y+F
Sbjct: 399 SGYSQAHPTHGLYQILEHFVENAKL-SSNYFISNVEDMMKVAAIVDELPLGLQEKYLFVV 457
Query: 361 APINNKLPFVCATFLKMVRQYSRNEPITRNWLSGTVEWPLPSPRTILDLVHLESVFDVLE 420
+P++ + + +S+ + + + P+T +L LES+ VL+
Sbjct: 458 SPVDVNDEISGQGLAQFAQNFSKAGIVRLREILAPDR--VKVPKTPTELKELESIHKVLD 515
Query: 421 LYLWLSYRFPDMFPDVKLVRDMETELDAIIQQ 452
LY+WLS R D FPD ++ ++ + +I+Q
Sbjct: 516 LYVWLSLRLEDSFPDREVAASQKSICNLLIEQ 547
>At1g60930.1 68414.m06858 DNA helicase, putative strong similarity
to DNA Helicase recQl4B [Arabidopsis thaliana]
GI:11121451; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00570: HRDC domain
Length = 1024
Score = 45.2 bits (102), Expect = 1e-04
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 19/132 (14%)
Query: 153 IVCFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGL 212
I C ++ D V+ A+ GH+ A +GS+ PG + +++ E ++ AT A G+
Sbjct: 631 IYCLSRMDCEKVTEALRVFGHKAAFYHGSMDPGKRAFVQKQWSKDE--INIICATVAFGM 688
Query: 213 GINL-SIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYGSAWETGHVTSYRP 271
GIN +R +I +SL K SI Q GRAGR G + V Y
Sbjct: 689 GINKPDVRFVIHHSLPK--------------SIEGYHQECGRAGRDGQ--RSSCVLYYSY 732
Query: 272 EDLATLKTLLSQ 283
D +K ++SQ
Sbjct: 733 TDYIRVKHMISQ 744
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 42.7 bits (96), Expect = 6e-04
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 153 IVCFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGL 212
I C ++ D VS +++ GH+ A +GS+ P + +++ E ++ AT A G+
Sbjct: 678 IYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDE--INIICATVAFGM 735
Query: 213 GINL-SIRRIIFYSLIKPV 230
GIN +R +I +SL K +
Sbjct: 736 GINKPDVRFVIHHSLPKSI 754
>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
similar to DNA helicase HEL308 [Homo sapiens]
GI:19110782; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00476: DNA polymerase family A
Length = 1548
Score = 39.9 bits (89), Expect = 0.004
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 202 KVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYGSAW 261
+V+ AT + G+NL RR+IF +P+I D I ++ Q++GRAGR G
Sbjct: 321 RVLTATSTLAAGVNLPARRVIFR---QPMIGR------DFIDGTRYKQMSGRAGRTGIDT 371
Query: 262 ETGHVTSYRPEDLATLKTLLSQPPEPV 288
+ V +P +L + LL++ P+
Sbjct: 372 KGDSVLICKPGELKRIMALLNETCPPL 398
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 39.1 bits (87), Expect = 0.007
Identities = 17/80 (21%), Positives = 33/80 (41%)
Query: 153 IVCFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGL 212
+ C N +V + + +G +P ++ KF D E C +V TD
Sbjct: 375 VFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAAR 434
Query: 213 GINLSIRRIIFYSLIKPVIN 232
G++L + ++ + K I+
Sbjct: 435 GLDLDVDHVVMFDFPKNSID 454
>At5g66750.1 68418.m08414 SNF2 domain-containing protein / helicase
domain-containing protein similar to
proliferation-associated SNF2-like protein [Homo
sapiens] GI:8980660; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain
Length = 764
Score = 37.5 bits (83), Expect = 0.022
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 170 QRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKV-MVATDAIGLGINLS 217
++G EV I GS+ + Q F+D +SSC + +++T A GLGINL+
Sbjct: 562 EKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRAGGLGINLT 610
>At1g05480.1 68414.m00557 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q9U7E0
Transcriptional regulator ATRX homolog {Caenorhabditis
elegans}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 588
Score = 37.1 bits (82), Expect = 0.029
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 164 VSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVA-TDAIGLGINL-SIRRI 221
VSR G EV ++G L + N+FNDP+S KV +A T A GI+L R+
Sbjct: 414 VSRFKWNPGEEVLYMHGKLEQKQRQTLINEFNDPKSKAKVFLASTKACSEGISLVGASRV 473
Query: 222 IFYSLI 227
I ++
Sbjct: 474 ILLDVV 479
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 35.9 bits (79), Expect = 0.068
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 144 LDNVQPGDCIVCFN-KNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCK 202
LD + IV N K + S+++ +++ G+ V ++G + F +
Sbjct: 571 LDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYN-- 628
Query: 203 VMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYGSAWE 262
V+VATD +G GI++ + VIN D K +++ + + GRAG+ G A
Sbjct: 629 VLVATDVVGRGIDIPD--------VAHVINYDMPKHIEM--YTHRIGRTGRAGKSGVA-- 676
Query: 263 TGHVTSYRPEDLATLKTLLSQ 283
T +T + E LK +L Q
Sbjct: 677 TSFLTLHDTEVFYDLKQMLVQ 697
>At1g70070.1 68414.m08062 DEAD/DEAH box helicase, putative similar
to SP|P35207 Antiviral protein SKI2 {Saccharomyces
cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 1171
Score = 35.5 bits (78), Expect = 0.090
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 202 KVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYG 258
KV+ AT+ + GIN+ R + SL K NE E + ++ Q+AGRAGR G
Sbjct: 523 KVVFATETLAAGINMPARTAVISSLSKKAGNERIE-----LGPNELYQMAGRAGRRG 574
>At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA
helicase, putative nearly identical to HUA enhancer 2
[Arabidopsis thaliana] GI:16024936
Length = 995
Score = 35.1 bits (77), Expect = 0.12
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 170 QRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLSIRRIIFYSLIKP 229
QRG +AV + L P K F E K + AT+ +G+N+ + ++F ++ K
Sbjct: 399 QRG--IAVHHSGLLPVIKELVELLFQ--EGLVKALFATETFAMGLNMPAKTVVFTAVKK- 453
Query: 230 VINEDGEKEMDVISISQALQIAGRAGRYGSAWETGHVTSYRPE--DLATLKTLLSQPPEP 287
DG+ I + +Q++GRAGR G E G E ++ TL+ ++ P P
Sbjct: 454 ---WDGDSHR-YIGSGEYIQMSGRAGRRGKD-ERGICIIMIDEQMEMNTLRDMMLGKPAP 508
Query: 288 V 288
+
Sbjct: 509 L 509
>At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF02810: SEC-C motif
Length = 862
Score = 34.7 bits (76), Expect = 0.16
Identities = 24/105 (22%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 123 MEVRSYKRLTQLKVEDTALGSLDNVQPGDCIVCFNKND--IYSVSRAIEQRGHEVAVIYG 180
M++ K +++ + + S + GD I+ F+ + + + + + ++G+ A + G
Sbjct: 519 MDLSDVKHCGKMRALEKLMASW--ISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDG 576
Query: 181 SLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINL-SIRRIIFY 224
S P + + + FN S +++T A GLG+NL S R++ +
Sbjct: 577 STPTNLRQSLVDDFNASPSKQVFLISTKAGGLGLNLVSANRVVIF 621
>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar
to SP|P35207 Antiviral protein SKI2 {Saccharomyces
cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 1347
Score = 34.3 bits (75), Expect = 0.21
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 202 KVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYG 258
KV+ +T+ +G+N R ++F +L K DG KE + + Q+AGRAGR G
Sbjct: 731 KVLFSTETFAMGVNAPARTVVFDALRK----FDG-KEFRQLLPGEYTQMAGRAGRRG 782
>At1g59760.1 68414.m06729 ATP-dependent RNA helicase, putative
similar to SP|P47047 ATP-dependent RNA helicase DOB1
{Saccharomyces cerevisiae}, HUA enhancer 2 [Arabidopsis
thaliana] GI:16024936; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 988
Score = 34.3 bits (75), Expect = 0.21
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 198 ESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAGRAGRY 257
E K + AT+ +G+N+ + ++F ++ K DG+K +S + +Q++GRAGR
Sbjct: 407 EGLIKCLFATETFSIGLNMPAKTVVFTNVRK----FDGDK-FRWLSSGEYIQMSGRAGRR 461
Query: 258 G 258
G
Sbjct: 462 G 462
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 34.3 bits (75), Expect = 0.21
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 16/146 (10%)
Query: 164 VSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINL-SIRRII 222
+ R ++QRG + I+G+ + + F E SC ++VATD G+++ + +I
Sbjct: 382 LERFLQQRGWKAVSIHGNKAQSERTRSLSLFK--EGSCPLLVATDVAARGLDIPDVEVVI 439
Query: 223 FYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYGSA--WETGHVTSYRPEDLATLKTL 280
Y+ P+ ED + GRAG+ G A + T E + L+
Sbjct: 440 NYTF--PLTTED---------YVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREA 488
Query: 281 LSQPPEPVTQAGLHPTSEQMELYAYH 306
P + + G H ++ +LY H
Sbjct: 489 GQVVPADLLKFGTHVKKKESKLYGAH 514
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 33.5 bits (73), Expect = 0.36
Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 28/204 (13%)
Query: 104 GEAGAINLIEEICNTTGEVMEVRSYKRLTQLKVEDTALGSLDNVQPGDCIVCFNKNDIYS 163
G AGA NL + EV V+ ++ L L L P I C NK D+
Sbjct: 364 GRAGAANL-----DVIQEVEYVKQEAKIVYL------LECLQKTSPPVLIFCENKADVDD 412
Query: 164 VSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLSIRRIIF 223
+ + +G E I+G + + F + V+VATD G++
Sbjct: 413 IHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKD--VLVATDVASKGLD-------- 462
Query: 224 YSLIKPVINEDGEKEMDVISISQALQIAGRAGRYGSAWETGHVTSYRPE-DLATLKTLLS 282
+ I+ VIN D E++ + + GR G+ G A T + + E L LK LL
Sbjct: 463 FPDIQHVINYDMPAEIE--NYVHRIGRTGRCGKTGIA--TTFINKNQSETTLLDLKHLLQ 518
Query: 283 QPPE--PVTQAGLHPTSEQMELYA 304
+ + P A L+ E+ E A
Sbjct: 519 EAKQRIPPVLAELNDPMEEAETIA 542
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 31.9 bits (69), Expect = 1.1
Identities = 55/205 (26%), Positives = 81/205 (39%), Gaps = 30/205 (14%)
Query: 104 GEAGAINLIEEICNTTGEVMEVRSYKRLTQLKVEDTALGSLDNVQPGDCIVCFNKNDIYS 163
G AGA NL + EV V+ ++ L L L P I C NK D+
Sbjct: 315 GRAGAANL-----DVIQEVEYVKQEAKIVYL------LECLQKTTPPVLIFCENKADVDD 363
Query: 164 VSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINL-SIRRII 222
+ + +G E I+G + + F + V+VATD G++ I+ +I
Sbjct: 364 IHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKD--VLVATDVASKGLDFPDIQHVI 421
Query: 223 FYSLIKPVINEDGEKEMDVISISQALQIAGRAGRYGSAWETGHVTSYRPE-DLATLKTLL 281
Y + GE E V I + GR G+ G A T + + E L LK LL
Sbjct: 422 NYDM-------PGEIENYVHRIGR----TGRCGKTGIA--TTFINKNQSEITLLDLKHLL 468
Query: 282 SQPPE--PVTQAGLHPTSEQMELYA 304
+ + P A L+ E+ E A
Sbjct: 469 QEAKQRIPPVLAELNGPMEETETIA 493
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 31.5 bits (68), Expect = 1.5
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 178 IYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLSIRRIIF-----YSLIKPVIN 232
++GSLPP Q F+ P +C+ + + I +L++ +++ Y +
Sbjct: 253 LHGSLPPEM---QVRVFSPPPPNCRRFIVSTNIA-ETSLTVDGVVYVIDSGYVKQRQYNP 308
Query: 233 EDGEKEMDVISIS--QALQIAGRAGR 256
G +DVI IS QA Q AGRAGR
Sbjct: 309 SSGMFSLDVIQISKVQANQRAGRAGR 334
>At1g26370.1 68414.m03217 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 717
Score = 31.1 bits (67), Expect = 1.9
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 148 QPGDCIVCFNKND-IYSVSRAIEQRGHEVA---------VIYGSLPPGTKLAQANKFNDP 197
+PGD +V D I SV R +++R + I+ +LP ++ P
Sbjct: 290 KPGDILVFLTGQDEIESVERLVQERLQNIPEDKRKLLPLAIFSALPSEQQMKVFAPA--P 347
Query: 198 ESSCKVMVATDAIGLGINL-SIRRIIFYSLIKPVINED--GEKEMDVISISQA--LQIAG 252
KV++AT+ I + IR +I +K + G + +DV+ S+A LQ +G
Sbjct: 348 TGFRKVILATNIAETSITIPGIRYVIDPGFVKARSYDPSKGMESLDVVPASKAQTLQRSG 407
Query: 253 RAGRYG 258
RAGR G
Sbjct: 408 RAGREG 413
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 30.7 bits (66), Expect = 2.5
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 153 IVCFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVATDAIGL 212
I C K + +S + V+ ++G +P + A N+F +S +V++ TD
Sbjct: 279 IFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDS--RVLITTDVWAR 336
Query: 213 GINL-SIRRIIFYSL 226
GI++ + +I Y L
Sbjct: 337 GIDVQQVSLVINYDL 351
>At3g24660.1 68416.m03096 leucine-rich repeat transmembrane protein
kinase, putative identical to putative kinase-like
protein TMKL1 precursor GB:P33543 from [Arabidopsis
thaliana], (Plant Mol. Biol. 23 (2), 415-421 (1993))
Length = 674
Score = 30.3 bits (65), Expect = 3.4
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 107 GAINL-IEEICNTTGEVMEVRSYKRLTQLKVEDTALGSLDNVQPGDC 152
G NL ++++ N TG+VME SY + + K+ D +L ++ G C
Sbjct: 362 GGENLTLDDVLNATGQVMEKTSYGTVYKAKLSDGGNIALRLLREGTC 408
>At3g22790.1 68416.m02873 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1694
Score = 30.3 bits (65), Expect = 3.4
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 436 VKLVRDMETELDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLAGQSMGE 495
+KL D T A Q IFQ L + +I DE S + S + + L QS E
Sbjct: 403 LKLEADGLTHKLAAKDQEIFQKQNELEKFQSLIEDEHSRYLEIEVSLKTLQSLYSQSQEE 462
Query: 496 EKGKLSELLVARGLITPQMLK--KLQQELSTDKKIDRTKKNRN 536
+K SEL G++ + KL+ ++S+ K+ ++ N
Sbjct: 463 QKVITSELQSRIGMLRDLETRNLKLEGDISSVKEENQNLSELN 505
>At5g45910.1 68418.m05646 GDSL-motif lipase/hydrolase family protein
similar to lipase [Arabidopsis thaliana] GI:1145627;
contains InterPro Entry IPR001087 Lipolytic enzyme,
G-D-S-L family
Length = 372
Score = 29.9 bits (64), Expect = 4.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 153 IVCFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFND 196
+V F N I V+ A+ + G ++ G+LP G A +FND
Sbjct: 196 LVPFVINKIMDVTSALIEEGAMTLIVPGNLPIGCSAALLERFND 239
>At1g61030.1 68414.m06871 expressed protein
Length = 840
Score = 29.5 bits (63), Expect = 5.9
Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 146 NVQPGDCIVCFNKNDIYSVSRAIEQRGHEVAVIYGSLPPGTKLAQANKFNDP-ESSCKVM 204
+ Q C+ ++ +S + E+R G + L +A +F + E+ +V
Sbjct: 39 STQESSCVWNYSSRSTFSDNDFSEKRNKRPRNGGGGFGSNSTLMEAQEFGELIENEDEVN 98
Query: 205 VATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQAL 248
A D + G + IRR SL+ ++ + + + ISQ++
Sbjct: 99 FALDGLKKGHKVRIRRAALSSLLSICESQYQRRSLRALGISQSI 142
>At1g22410.1 68414.m02802 2-dehydro-3-deoxyphosphoheptonate
aldolase, putative / 3-deoxy-D-arabino-heptulosonate
7-phosphate synthase, putative / DAHP synthetase,
putative similar to 3-deoxy-D-arabino-heptulosonate
7-phosphate GI:170224 from [Nicotiana tabacum],
SP|P21357 from Solanum tuberosum; contains Pfam Class-II
DAHP synthetase family domain PF01474
Length = 527
Score = 29.5 bits (63), Expect = 5.9
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 130 RLTQLKVEDTALGSLDNVQPGDCIVC---FNKNDIYSVSRAIEQRGHEVAVIYGSLPPGT 186
RL + ++ A+G +Q GDC FN N+I R + Q G +++G P
Sbjct: 117 RLLEERLGQAAMGEAFLLQGGDCAESFKEFNANNIRDTFRILLQMG--AVLMFGGQVPVV 174
Query: 187 KLAQ-ANKFNDPES 199
K+ + A +F P S
Sbjct: 175 KVGRMAGQFAKPRS 188
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 29.1 bits (62), Expect = 7.8
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 193 KFNDPESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINEDGEKEMDVISISQALQIAG 252
+F++PE+S K A G L+++ F ++++PVI E ++ ++ G
Sbjct: 344 RFDEPEASQKARAAAVLANEG-GLAVKN--FIAVLEPVIGEAEKEYWTLLRSKDRFDKGG 400
Query: 253 RAGRYG 258
R GR G
Sbjct: 401 RGGRGG 406
>At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P41410 DNA repair
protein rhp54 (RAD54 homolog) {Schizosaccharomyces
pombe}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1132
Score = 29.1 bits (62), Expect = 7.8
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 172 GHEVAVIYGSLPPGTKLAQANKFNDPESSCKVMVA-TDAIGLGINL-SIRRIIFYSLI 227
G ++ +++G + + + FN P+S KV++A T A GI+L R++ ++
Sbjct: 972 GEQILLMHGKVEQRDRQHMIDNFNKPDSGSKVLLASTKACSEGISLVGASRVVILDVV 1029
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,701,148
Number of Sequences: 28952
Number of extensions: 541691
Number of successful extensions: 1349
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1312
Number of HSP's gapped (non-prelim): 36
length of query: 539
length of database: 12,070,560
effective HSP length: 85
effective length of query: 454
effective length of database: 9,609,640
effective search space: 4362776560
effective search space used: 4362776560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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