Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000879-TA|BGIBMGA000879-PA|IPR008015|GMP
phosphodiesterase, delta subunit
         (131 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    28   0.41 
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    27   1.3  
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   3.8  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   5.1  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    24   6.7  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    24   8.9  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    24   8.9  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    24   8.9  

>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 28.3 bits (60), Expect = 0.41
 Identities = 11/31 (35%), Positives = 21/31 (67%)

Query: 66  RCLEEWFFDFGYVIPNSTNTWQSVIESAPES 96
           R ++ WFF+       ST+T++SV+++A +S
Sbjct: 219 REIQSWFFELHSKFCLSTSTYESVVQAAQDS 249


>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 95  ESQMMPANVLNGNVVIETKFFDGDLLITTSRVRLF 129
           ES+ +  + + G  ++ET+F  GD L    RV LF
Sbjct: 32  ESRAIEPDNIAGESIVETRFTGGDSLDEPIRVTLF 66


>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 144

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 68  LEEWFFDFGYVIPNSTNTWQSVIES 92
           + EWF   G++I  S+ T  SV+ S
Sbjct: 117 VSEWFIHRGFIIDESSKTEDSVLLS 141


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 62  LFKGRCLEEWFFDFGYVIPNSTNTWQSVIESAPESQMMPAN 102
           +  G+  +   +DF  + P ST     VI+  PE +  P N
Sbjct: 174 VLSGKVYDRASYDFINLGPESTVCLYGVIKELPEGKSAPGN 214


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 61  VLFKGRCLEEWFFDFGYVIPNSTN 84
           ++F+ + + EWF  F + +P   N
Sbjct: 107 IIFEDKSMLEWFDYFAWTVPKDPN 130


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 7   DTGKILWQHNEDMSSPDAEHEARVPKRILKCRVVS 41
           +T + LW  +  + +P+++ E  VP    K +VVS
Sbjct: 571 NTKRKLWPQSTLIQAPNSDDEENVPSPSPKKKVVS 605


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 81  NSTNTWQSVIE--SAPESQMMPANVLNGNVVIETKFFDGDLLI 121
           + T   Q +I+  S+P+      N L  NVV+ TK  +G+ +I
Sbjct: 428 HGTRALQKIIDLVSSPDQISCIVNALRPNVVLLTKDLNGNHVI 470


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 62  LFKGRCLEEWFFDFGYVIP 80
           LF  R +E W F F  V+P
Sbjct: 287 LFLNRIIETWLFFFSSVLP 305


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.135    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 623,684
Number of Sequences: 5004
Number of extensions: 23954
Number of successful extensions: 52
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 8
length of query: 131
length of database: 2,362,478
effective HSP length: 66
effective length of query: 65
effective length of database: 2,032,214
effective search space: 132093910
effective search space used: 132093910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)