Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000879-TA|BGIBMGA000879-PA|IPR008015|GMP
phosphodiesterase, delta subunit
         (131 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   1.5  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   3.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   4.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   7.8  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 75  FGYVIPNSTNTWQSVIESAPESQMMPA 101
           F  +  N+   W S++  +PE+Q + A
Sbjct: 330 FNLIDQNAVGCWNSLLPYSPENQAVVA 356


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 73  FDFGYVIPNSTNTWQSVIESAPESQMMPANVLNG 106
           F+FG    N     QS ++  P  ++ P   +NG
Sbjct: 92  FEFGKEYKNGFIKGQSEVQRGPGGRLSPYFGING 125


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 81  NSTN-TWQSVIESAPESQMMPANV 103
           N +N TW   +++ PE  M+P ++
Sbjct: 391 NESNITWPGRLQTKPEGFMIPTHL 414


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 35  LKCRVVSREMNFSSIESMDRFRLEQK 60
           + C V+ RE     I S+D  R   K
Sbjct: 312 VSCLVIDRETFNQLISSLDEIRTRYK 337


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.135    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,828
Number of Sequences: 429
Number of extensions: 1283
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 131
length of database: 140,377
effective HSP length: 51
effective length of query: 80
effective length of database: 118,498
effective search space:  9479840
effective search space used:  9479840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)