Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000879-TA|BGIBMGA000879-PA|IPR008015|GMP
phosphodiesterase, delta subunit
(131 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1131 - 26358339-26360609 29 1.2
11_06_0149 - 20636801-20637044,20637859-20639180 29 1.2
04_04_1660 - 35140641-35141894 28 2.1
03_03_0162 - 14964106-14964644,14964810-14965020 28 2.8
03_02_0136 + 5828645-5828669,5829207-5829282,5829634-5829913,583... 27 3.7
08_01_0815 - 7914634-7914740,7915262-7915357,7922268-7922328,792... 27 6.5
07_03_0964 - 22989470-22989618,22989729-22990476 27 6.5
06_03_0670 - 23336385-23336504,23336769-23337092,23338315-233383... 26 8.6
03_03_0206 + 15447054-15447181,15448243-15448298,15448373-154485... 26 8.6
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 26 8.6
>12_02_1131 - 26358339-26360609
Length = 756
Score = 29.1 bits (62), Expect = 1.2
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 28 ARVPKR-ILKCRVVSREMNFSSIESMDRFRLEQKVLFKGRCLEEWFFDFGYVIPNSTNTW 86
AR+P R +L+CR +SR +++ S D F +L R + ++ N W
Sbjct: 25 ARMPARSVLRCRCLSRA--WAAALSTDAFVDHHLLLANRRGGPKLCIPPRSASADTINAW 82
Query: 87 QSVIESAPESQMMPANVLNGNVVIETKFFDGDLLITTSRVRLFYI 131
E+ +P NG ++ + G LL+ RL+++
Sbjct: 83 SPEAETTTPLMAVPHGTRNGRIIPYGRPCRGLLLLHAIFARLYFV 127
>11_06_0149 - 20636801-20637044,20637859-20639180
Length = 521
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 77 YVIPNSTNTWQSVIESAPESQMMPANVL 104
+V PNST+ W +VI+ A + M P V+
Sbjct: 340 HVDPNSTSAWNAVIKGAKKWVMFPPEVV 367
>04_04_1660 - 35140641-35141894
Length = 417
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 70 EWFFDFGYVIPNSTNTWQSVIESAPESQMMPANVLNGNVVIETKFFDGDLLITTSRVR 127
EW + G + PN + + E+A + MP V GN ++ DG + RVR
Sbjct: 316 EWD-EAGRMPPNMYRCFTGLCEAAAQGNAMPTAVAGGNNKVKVFGGDGKVWFAGKRVR 372
>03_03_0162 - 14964106-14964644,14964810-14965020
Length = 249
Score = 27.9 bits (59), Expect = 2.8
Identities = 18/63 (28%), Positives = 22/63 (34%)
Query: 32 KRILKCRVVSREMNFSSIESMDRFRLEQKVLFKGRCLEEWFFDFGYVIPNSTNTWQSVIE 91
KRI C R +++ RFRLEQ W + V W V E
Sbjct: 35 KRIFACGCAGRTEKLRFSQTLSRFRLEQPHATISFVRAHWLGEGSPVHERRQQRWGVVNE 94
Query: 92 SAP 94
AP
Sbjct: 95 GAP 97
>03_02_0136 +
5828645-5828669,5829207-5829282,5829634-5829913,
5830372-5830462,5830541-5830665,5830742-5830839,
5830948-5831047
Length = 264
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/51 (23%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 10 KILWQHNEDMSSP-DAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQ 59
K++W+ N+ M++P D++ ++ VP R + + V SI+ ++ + +++
Sbjct: 26 KLMWK-NDSMTNPFDSDSDSEVPSRPSRAQSVPVRRTDQSIQELEDYAVDK 75
>08_01_0815 -
7914634-7914740,7915262-7915357,7922268-7922328,
7922365-7923621
Length = 506
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 87 QSVIESAPESQMMPANVLNGNVVIETKFFDGDLL 120
+SV+E A E QM+ + N N + KF G ++
Sbjct: 233 RSVVEQAHEIQMLAKELENNNCELPDKFVAGGII 266
>07_03_0964 - 22989470-22989618,22989729-22990476
Length = 298
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 87 QSVIESAPESQMMPANVLNGNVVIETKFFDGDLL 120
+SV+E A E QM+ + N N + KF G ++
Sbjct: 88 RSVVEQAHEIQMLAKELENNNCELPDKFVAGGII 121
>06_03_0670 -
23336385-23336504,23336769-23337092,23338315-23338387,
23338715-23338761,23338955-23339104,23339409-23339474,
23339940-23340013,23340740-23341520,23341730-23342146,
23344001-23344003
Length = 684
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 13 WQHNEDMSSPDAEHEARVPKRILKCR 38
+QH+E SS +AE R KRI++ R
Sbjct: 551 YQHHETESSTEAEQRIREYKRIIRRR 576
>03_03_0206 +
15447054-15447181,15448243-15448298,15448373-15448515,
15448630-15448827,15448901-15449100,15449585-15449684,
15449769-15450350,15450434-15450556,15451028-15451108,
15451188-15451495,15451577-15451816,15452261-15452345,
15452429-15452606,15453053-15453227,15453826-15453982
Length = 917
Score = 26.2 bits (55), Expect = 8.6
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 77 YVIPNSTNTWQSVIESAPESQMMPANVLNGNVVIETKFFDGDLLITT 123
+V P T+ W +++ M P + G V + DGD+ I T
Sbjct: 224 HVDPGLTSAWNTLLCGRKRWAMYPPGRVPGGVTVHVSDEDGDVDIET 270
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 87 QSVIESAPESQMMPANVLNGNVVIETKFFDGDLL 120
+S++E A E QM+ + N N + KF G ++
Sbjct: 88 RSIVEQAHEIQMLAKELENNNCELPDKFVAGGII 121
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.135 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,854,392
Number of Sequences: 37544
Number of extensions: 142194
Number of successful extensions: 274
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 10
length of query: 131
length of database: 14,793,348
effective HSP length: 74
effective length of query: 57
effective length of database: 12,015,092
effective search space: 684860244
effective search space used: 684860244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)
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