GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000879-TA|BGIBMGA000879-PA|IPR008015|GMP
phosphodiesterase, delta subunit
         (131 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)                    51   3e-07
SB_11438| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.006
SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       31   0.40 
SB_58802| Best HMM Match : Gag_spuma (HMM E-Value=2.7)                 27   5.0  
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_13209| Best HMM Match : LRR_1 (HMM E-Value=1.7e-13)                 27   6.6  

>SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)
          Length = 636

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 21/28 (75%), Positives = 24/28 (85%)

Query: 1   MNLRDADTGKILWQHNEDMSSPDAEHEA 28
           MNLRDADTGK+LWQ +ED+S P  EHEA
Sbjct: 572 MNLRDADTGKVLWQGSEDLSLPGVEHEA 599


>SB_11438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 36.7 bits (81), Expect = 0.006
 Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 13/102 (12%)

Query: 3   LRDADTGKILWQH------NEDMSSPDAEHEA------RVPKRILKCRVVSREMNFS-SI 49
           +RD +TG  L++       +E+++  D +  A      +     LK + V   + F+   
Sbjct: 77  IRDMETGATLFEIAKPDNIDEEITDNDEDPNAGRYVRYKFTPEFLKLKTVGATVEFTVGD 136

Query: 50  ESMDRFRLEQKVLFKGRCLEEWFFDFGYVIPNSTNTWQSVIE 91
           + +  FR+ ++  +  + L+ + F+FG+ IPNS NT + + E
Sbjct: 137 KPVTNFRMVERHYYHEKLLKSFDFEFGFCIPNSKNTCEHIYE 178


>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 2   NLRDADTGKILWQHNEDMSSPDAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQKV 61
           +++  D G    +   D+ S  +  +  V  +  K  VV +  N  S+E  D F    +V
Sbjct: 246 DVKQDDKGTYKVEITNDLGSISSTADLEVTPKPAKPEVVRKMENVESVEGSDAF---FEV 302

Query: 62  LFKGRCL--EEWFFDFGYVIPNS 82
            FKG  +   EWF D   + P+S
Sbjct: 303 KFKGYPIPKREWFHDSKKIEPSS 325


>SB_58802| Best HMM Match : Gag_spuma (HMM E-Value=2.7)
          Length = 810

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 15  HNEDMSSPDAEHEARVPKRILKCRVVSREMNFSSIES 51
           H ED  +  A  E+  P+ ++ C + SR  N S  ES
Sbjct: 319 HGEDCQNGAASEESCPPEGVVPCSISSRLGNTSGYES 355


>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2346

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/32 (34%), Positives = 22/32 (68%)

Query: 16   NEDMSSPDAEHEARVPKRILKCRVVSREMNFS 47
            +E + +  AE + ++P+R+L    ++RE+NFS
Sbjct: 1204 SETIQAVSAEDKLKLPRRLLPKDGLARELNFS 1235


>SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 75  FGYVIPNSTNTWQSVIESAPESQM 98
           FGY+ PNSTN +   I S   S++
Sbjct: 206 FGYIQPNSTNDYNFGISSEGNSEL 229


>SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2504

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 35   LKCRVVSREMNFSSIESMDRFRLEQKVLF 63
            L C++V  E NF S    DR+ + Q  +F
Sbjct: 1421 LPCKIVKHEQNFRSHILPDRYLIAQPTIF 1449


>SB_13209| Best HMM Match : LRR_1 (HMM E-Value=1.7e-13)
          Length = 489

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 74  DFGYVIPNSTNTWQSVIESAPESQMMPANVLN 105
           D    + NS++ W + +E + E + +P NV N
Sbjct: 53  DLDETLSNSSSHWDTDLEESSEDEDLPLNVKN 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.135    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,374,549
Number of Sequences: 59808
Number of extensions: 159254
Number of successful extensions: 265
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 8
length of query: 131
length of database: 16,821,457
effective HSP length: 75
effective length of query: 56
effective length of database: 12,335,857
effective search space: 690807992
effective search space used: 690807992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)