Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000879-TA|BGIBMGA000879-PA|IPR008015|GMP
phosphodiesterase, delta subunit
(131 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456980-1|CAG33261.1| 150|Homo sapiens PDE6D protein. 233 1e-61
BT007278-1|AAP35942.1| 150|Homo sapiens phosphodiesterase 6D, c... 233 1e-61
BC007831-1|AAH07831.1| 150|Homo sapiens phosphodiesterase 6D, c... 233 1e-61
AF045999-1|AAC39720.1| 150|Homo sapiens rod cGMP phosphodiester... 233 1e-61
AF042835-1|AAC25953.1| 150|Homo sapiens phosphodiesterase delta... 233 1e-61
AF022912-1|AAB87872.1| 150|Homo sapiens cGMP phosphodiesterase ... 233 1e-61
AC073476-3|AAY24151.1| 150|Homo sapiens unknown protein. 233 1e-61
AJ001626-1|CAA04880.1| 150|Homo sapiens p17 protein protein. 229 3e-60
AF028789-1|AAD01876.1| 220|Homo sapiens UNC-119b protein. 38 0.008
U40998-1|AAC50360.1| 240|Homo sapiens retinal protein protein. 38 0.014
BX641031-1|CAE46019.1| 167|Homo sapiens hypothetical protein pr... 38 0.014
BC027176-1|AAH27176.1| 240|Homo sapiens unc-119 homolog (C. ele... 38 0.014
AF125998-1|AAD31422.1| 240|Homo sapiens retinal photoreceptor s... 38 0.014
AF028788-1|AAD01875.1| 240|Homo sapiens UNC-119 protein. 38 0.014
L02320-1|AAA36541.1| 583|Homo sapiens radixin protein. 29 3.6
BC047109-1|AAH47109.1| 583|Homo sapiens radixin protein. 29 3.6
BC020751-1|AAH20751.1| 342|Homo sapiens Unknown (protein for IM... 29 3.6
BC002626-1|AAH02626.1| 339|Homo sapiens Unknown (protein for IM... 29 3.6
D83780-1|BAA12109.2| 1164|Homo sapiens KIAA0196 protein. 29 4.8
BC106015-1|AAI06016.1| 1159|Homo sapiens KIAA0196 protein. 29 4.8
BC026951-1|AAH26951.1| 1159|Homo sapiens KIAA0196 protein. 29 4.8
AK223628-1|BAD97348.1| 1164|Homo sapiens Protein KIAA0196 varian... 29 4.8
BC051847-1|AAH51847.1| 561|Homo sapiens zinc finger protein 394... 29 6.3
BC025241-1|AAH25241.1| 561|Homo sapiens zinc finger protein 394... 29 6.3
BC017051-1|AAH17051.1| 162|Homo sapiens ZNF394 protein protein. 29 6.3
AY642122-1|AAT67053.1| 561|Homo sapiens zinc finger protein 394... 29 6.3
AY261374-1|AAP94877.1| 217|Homo sapiens truncated zinc finger p... 29 6.3
AK222948-1|BAD96668.1| 561|Homo sapiens zinc finger protein 99 ... 29 6.3
AK022360-1|BAB14021.1| 561|Homo sapiens protein ( Homo sapiens ... 29 6.3
>CR456980-1|CAG33261.1| 150|Homo sapiens PDE6D protein.
Length = 150
Score = 233 bits (570), Expect = 1e-61
Identities = 103/131 (78%), Positives = 120/131 (91%)
Query: 1 MNLRDADTGKILWQHNEDMSSPDAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQK 60
MNLRDA+TGKILWQ ED+S P EHEARVPK+ILKC+ VSRE+NFSS E M++FRLEQK
Sbjct: 20 MNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQK 79
Query: 61 VLFKGRCLEEWFFDFGYVIPNSTNTWQSVIESAPESQMMPANVLNGNVVIETKFFDGDLL 120
V FKG+CLEEWFF+FG+VIPNSTNTWQS+IE+APESQMMPA+VL GNV+IETKFFD DLL
Sbjct: 80 VYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLL 139
Query: 121 ITTSRVRLFYI 131
++TSRVRLFY+
Sbjct: 140 VSTSRVRLFYV 150
>BT007278-1|AAP35942.1| 150|Homo sapiens phosphodiesterase 6D,
cGMP-specific, rod, delta protein.
Length = 150
Score = 233 bits (570), Expect = 1e-61
Identities = 103/131 (78%), Positives = 120/131 (91%)
Query: 1 MNLRDADTGKILWQHNEDMSSPDAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQK 60
MNLRDA+TGKILWQ ED+S P EHEARVPK+ILKC+ VSRE+NFSS E M++FRLEQK
Sbjct: 20 MNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQK 79
Query: 61 VLFKGRCLEEWFFDFGYVIPNSTNTWQSVIESAPESQMMPANVLNGNVVIETKFFDGDLL 120
V FKG+CLEEWFF+FG+VIPNSTNTWQS+IE+APESQMMPA+VL GNV+IETKFFD DLL
Sbjct: 80 VYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLL 139
Query: 121 ITTSRVRLFYI 131
++TSRVRLFY+
Sbjct: 140 VSTSRVRLFYV 150
>BC007831-1|AAH07831.1| 150|Homo sapiens phosphodiesterase 6D,
cGMP-specific, rod, delta protein.
Length = 150
Score = 233 bits (570), Expect = 1e-61
Identities = 103/131 (78%), Positives = 120/131 (91%)
Query: 1 MNLRDADTGKILWQHNEDMSSPDAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQK 60
MNLRDA+TGKILWQ ED+S P EHEARVPK+ILKC+ VSRE+NFSS E M++FRLEQK
Sbjct: 20 MNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQK 79
Query: 61 VLFKGRCLEEWFFDFGYVIPNSTNTWQSVIESAPESQMMPANVLNGNVVIETKFFDGDLL 120
V FKG+CLEEWFF+FG+VIPNSTNTWQS+IE+APESQMMPA+VL GNV+IETKFFD DLL
Sbjct: 80 VYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLL 139
Query: 121 ITTSRVRLFYI 131
++TSRVRLFY+
Sbjct: 140 VSTSRVRLFYV 150
>AF045999-1|AAC39720.1| 150|Homo sapiens rod cGMP phosphodiesterase
delta subunit protein.
Length = 150
Score = 233 bits (570), Expect = 1e-61
Identities = 103/131 (78%), Positives = 120/131 (91%)
Query: 1 MNLRDADTGKILWQHNEDMSSPDAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQK 60
MNLRDA+TGKILWQ ED+S P EHEARVPK+ILKC+ VSRE+NFSS E M++FRLEQK
Sbjct: 20 MNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQK 79
Query: 61 VLFKGRCLEEWFFDFGYVIPNSTNTWQSVIESAPESQMMPANVLNGNVVIETKFFDGDLL 120
V FKG+CLEEWFF+FG+VIPNSTNTWQS+IE+APESQMMPA+VL GNV+IETKFFD DLL
Sbjct: 80 VYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLL 139
Query: 121 ITTSRVRLFYI 131
++TSRVRLFY+
Sbjct: 140 VSTSRVRLFYV 150
>AF042835-1|AAC25953.1| 150|Homo sapiens phosphodiesterase delta
subunit protein.
Length = 150
Score = 233 bits (570), Expect = 1e-61
Identities = 103/131 (78%), Positives = 120/131 (91%)
Query: 1 MNLRDADTGKILWQHNEDMSSPDAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQK 60
MNLRDA+TGKILWQ ED+S P EHEARVPK+ILKC+ VSRE+NFSS E M++FRLEQK
Sbjct: 20 MNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQK 79
Query: 61 VLFKGRCLEEWFFDFGYVIPNSTNTWQSVIESAPESQMMPANVLNGNVVIETKFFDGDLL 120
V FKG+CLEEWFF+FG+VIPNSTNTWQS+IE+APESQMMPA+VL GNV+IETKFFD DLL
Sbjct: 80 VYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLL 139
Query: 121 ITTSRVRLFYI 131
++TSRVRLFY+
Sbjct: 140 VSTSRVRLFYV 150
>AF022912-1|AAB87872.1| 150|Homo sapiens cGMP phosphodiesterase
delta subunit protein.
Length = 150
Score = 233 bits (570), Expect = 1e-61
Identities = 103/131 (78%), Positives = 120/131 (91%)
Query: 1 MNLRDADTGKILWQHNEDMSSPDAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQK 60
MNLRDA+TGKILWQ ED+S P EHEARVPK+ILKC+ VSRE+NFSS E M++FRLEQK
Sbjct: 20 MNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQK 79
Query: 61 VLFKGRCLEEWFFDFGYVIPNSTNTWQSVIESAPESQMMPANVLNGNVVIETKFFDGDLL 120
V FKG+CLEEWFF+FG+VIPNSTNTWQS+IE+APESQMMPA+VL GNV+IETKFFD DLL
Sbjct: 80 VYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLL 139
Query: 121 ITTSRVRLFYI 131
++TSRVRLFY+
Sbjct: 140 VSTSRVRLFYV 150
>AC073476-3|AAY24151.1| 150|Homo sapiens unknown protein.
Length = 150
Score = 233 bits (570), Expect = 1e-61
Identities = 103/131 (78%), Positives = 120/131 (91%)
Query: 1 MNLRDADTGKILWQHNEDMSSPDAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQK 60
MNLRDA+TGKILWQ ED+S P EHEARVPK+ILKC+ VSRE+NFSS E M++FRLEQK
Sbjct: 20 MNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQK 79
Query: 61 VLFKGRCLEEWFFDFGYVIPNSTNTWQSVIESAPESQMMPANVLNGNVVIETKFFDGDLL 120
V FKG+CLEEWFF+FG+VIPNSTNTWQS+IE+APESQMMPA+VL GNV+IETKFFD DLL
Sbjct: 80 VYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLL 139
Query: 121 ITTSRVRLFYI 131
++TSRVRLFY+
Sbjct: 140 VSTSRVRLFYV 150
>AJ001626-1|CAA04880.1| 150|Homo sapiens p17 protein protein.
Length = 150
Score = 229 bits (559), Expect = 3e-60
Identities = 101/131 (77%), Positives = 119/131 (90%)
Query: 1 MNLRDADTGKILWQHNEDMSSPDAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQK 60
MNLRDA+TGKILWQ ED+S P EHEARVPK+ILKC+ VSRE+NFSS E M++FRLEQK
Sbjct: 20 MNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQK 79
Query: 61 VLFKGRCLEEWFFDFGYVIPNSTNTWQSVIESAPESQMMPANVLNGNVVIETKFFDGDLL 120
V FKG+CLEEWFF+FG+VIPNSTNTWQS+IE+APESQ+MPA+VL GNV+IETKFFD DLL
Sbjct: 80 VYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQVMPASVLTGNVIIETKFFDDDLL 139
Query: 121 ITTSRVRLFYI 131
++TSRV LFY+
Sbjct: 140 VSTSRVGLFYV 150
>AF028789-1|AAD01876.1| 220|Homo sapiens UNC-119b protein.
Length = 220
Score = 38.3 bits (85), Expect = 0.008
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 35 LKCRVVSREMNFS-SIESMDRFRLEQKVLFKGRCLEEWFFDFGYVIPNSTNTWQSVIESA 93
L+ R V + F+ + ++ FR+ ++ F+ + L+ + F FG+ IP+S NT + + +
Sbjct: 138 LRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFP 197
Query: 94 PESQMMPA 101
P S+ + A
Sbjct: 198 PLSEELSA 205
>U40998-1|AAC50360.1| 240|Homo sapiens retinal protein protein.
Length = 240
Score = 37.5 bits (83), Expect = 0.014
Identities = 18/71 (25%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 35 LKCRVVSREMNFS-SIESMDRFRLEQKVLFKGRCLEEWFFDFGYVIPNSTNTWQSVIESA 93
L+ R V + F+ + ++ FR+ ++ F+ + L+ + F FG+ IP+S NT + + +
Sbjct: 138 LRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFP 197
Query: 94 PESQMMPANVL 104
P S+ + + ++
Sbjct: 198 PLSEELISEMI 208
>BX641031-1|CAE46019.1| 167|Homo sapiens hypothetical protein
protein.
Length = 167
Score = 37.5 bits (83), Expect = 0.014
Identities = 18/71 (25%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 35 LKCRVVSREMNFS-SIESMDRFRLEQKVLFKGRCLEEWFFDFGYVIPNSTNTWQSVIESA 93
L+ R V + F+ + ++ FR+ ++ F+ + L+ + F FG+ IP+S NT + + +
Sbjct: 65 LRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFP 124
Query: 94 PESQMMPANVL 104
P S+ + + ++
Sbjct: 125 PLSEELISEMI 135
>BC027176-1|AAH27176.1| 240|Homo sapiens unc-119 homolog (C.
elegans) protein.
Length = 240
Score = 37.5 bits (83), Expect = 0.014
Identities = 18/71 (25%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 35 LKCRVVSREMNFS-SIESMDRFRLEQKVLFKGRCLEEWFFDFGYVIPNSTNTWQSVIESA 93
L+ R V + F+ + ++ FR+ ++ F+ + L+ + F FG+ IP+S NT + + +
Sbjct: 138 LRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFP 197
Query: 94 PESQMMPANVL 104
P S+ + + ++
Sbjct: 198 PLSEELISEMI 208
>AF125998-1|AAD31422.1| 240|Homo sapiens retinal photoreceptor
synaptic protein protein.
Length = 240
Score = 37.5 bits (83), Expect = 0.014
Identities = 18/71 (25%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 35 LKCRVVSREMNFS-SIESMDRFRLEQKVLFKGRCLEEWFFDFGYVIPNSTNTWQSVIESA 93
L+ R V + F+ + ++ FR+ ++ F+ + L+ + F FG+ IP+S NT + + +
Sbjct: 138 LRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFP 197
Query: 94 PESQMMPANVL 104
P S+ + + ++
Sbjct: 198 PLSEELISEMI 208
>AF028788-1|AAD01875.1| 240|Homo sapiens UNC-119 protein.
Length = 240
Score = 37.5 bits (83), Expect = 0.014
Identities = 18/71 (25%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 35 LKCRVVSREMNFS-SIESMDRFRLEQKVLFKGRCLEEWFFDFGYVIPNSTNTWQSVIESA 93
L+ R V + F+ + ++ FR+ ++ F+ + L+ + F FG+ IP+S NT + + +
Sbjct: 138 LRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFP 197
Query: 94 PESQMMPANVL 104
P S+ + + ++
Sbjct: 198 PLSEELISEMI 208
>L02320-1|AAA36541.1| 583|Homo sapiens radixin protein.
Length = 583
Score = 29.5 bits (63), Expect = 3.6
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Query: 30 VPKRI-LKCRVVSREMNFSSIESMDRFRLEQKVLFKGRCLEEWFFDFGYVIPNSTNTWQS 88
+PK I ++ + E+ F+ + +L +V+ E WFF YV +TW
Sbjct: 1 MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLK 60
Query: 89 VIESAPESQMMPANVLNGNVVIETKFFDGDL---LITTSRVRLFYI 131
+ + + + N L KFF D+ LI RLF++
Sbjct: 61 LNKKVTQQDVKKENPL--QFKFRAKFFPEDVSEELIQEITQRLFFL 104
>BC047109-1|AAH47109.1| 583|Homo sapiens radixin protein.
Length = 583
Score = 29.5 bits (63), Expect = 3.6
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Query: 30 VPKRI-LKCRVVSREMNFSSIESMDRFRLEQKVLFKGRCLEEWFFDFGYVIPNSTNTWQS 88
+PK I ++ + E+ F+ + +L +V+ E WFF YV +TW
Sbjct: 1 MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLK 60
Query: 89 VIESAPESQMMPANVLNGNVVIETKFFDGDL---LITTSRVRLFYI 131
+ + + + N L KFF D+ LI RLF++
Sbjct: 61 LNKKVTQQDVKKENPL--QFKFRAKFFPEDVSEELIQEITQRLFFL 104
>BC020751-1|AAH20751.1| 342|Homo sapiens Unknown (protein for
IMAGE:4691774) protein.
Length = 342
Score = 29.5 bits (63), Expect = 3.6
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Query: 30 VPKRI-LKCRVVSREMNFSSIESMDRFRLEQKVLFKGRCLEEWFFDFGYVIPNSTNTWQS 88
+PK I ++ + E+ F+ + +L +V+ E WFF YV +TW
Sbjct: 1 MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLK 60
Query: 89 VIESAPESQMMPANVLNGNVVIETKFFDGDL---LITTSRVRLFYI 131
+ + + + N L KFF D+ LI RLF++
Sbjct: 61 LNKKVTQQDVKKENPL--QFKFRAKFFPEDVSEELIQEITQRLFFL 104
>BC002626-1|AAH02626.1| 339|Homo sapiens Unknown (protein for
IMAGE:3607251) protein.
Length = 339
Score = 29.5 bits (63), Expect = 3.6
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Query: 30 VPKRI-LKCRVVSREMNFSSIESMDRFRLEQKVLFKGRCLEEWFFDFGYVIPNSTNTWQS 88
+PK I ++ + E+ F+ + +L +V+ E WFF YV +TW
Sbjct: 1 MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLK 60
Query: 89 VIESAPESQMMPANVLNGNVVIETKFFDGDL---LITTSRVRLFYI 131
+ + + + N L KFF D+ LI RLF++
Sbjct: 61 LNKKVTQQDVKKENPL--QFKFRAKFFPEDVSEELIQEITQRLFFL 104
>D83780-1|BAA12109.2| 1164|Homo sapiens KIAA0196 protein.
Length = 1164
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 73 FDFGYVIPNSTNTWQSVIESAPESQMMPANVLNGNVVIETKFF 115
FDF Y W+S +++ PE Q + N+ I T+F+
Sbjct: 61 FDFSYF--KGPELWESKLDAKPELQDLDEEFRENNIEIVTRFY 101
>BC106015-1|AAI06016.1| 1159|Homo sapiens KIAA0196 protein.
Length = 1159
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 73 FDFGYVIPNSTNTWQSVIESAPESQMMPANVLNGNVVIETKFF 115
FDF Y W+S +++ PE Q + N+ I T+F+
Sbjct: 56 FDFSYF--KGPELWESKLDAKPELQDLDEEFRENNIEIVTRFY 96
>BC026951-1|AAH26951.1| 1159|Homo sapiens KIAA0196 protein.
Length = 1159
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 73 FDFGYVIPNSTNTWQSVIESAPESQMMPANVLNGNVVIETKFF 115
FDF Y W+S +++ PE Q + N+ I T+F+
Sbjct: 56 FDFSYF--KGPELWESKLDAKPELQDLDEEFRENNIEIVTRFY 96
>AK223628-1|BAD97348.1| 1164|Homo sapiens Protein KIAA0196 variant
protein.
Length = 1164
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 73 FDFGYVIPNSTNTWQSVIESAPESQMMPANVLNGNVVIETKFF 115
FDF Y W+S +++ PE Q + N+ I T+F+
Sbjct: 61 FDFSYF--KGPELWESKLDAKPELQDLDEEFRENNIEIVTRFY 101
>BC051847-1|AAH51847.1| 561|Homo sapiens zinc finger protein 394
protein.
Length = 561
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 13 WQHNEDMSSPDAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQKVLFKGRCLEEWF 72
W+ N +SPD E +++ V E S + + R L ++L K + LE
Sbjct: 49 WEPNYPAASPDPETSRLHFRQLRYQEVAGPEEALSRLRELCRRWLRPELLSKEQILELLV 108
Query: 73 FD-FGYVIPNSTNTWQSVIESAPES 96
+ F ++P W V E PES
Sbjct: 109 LEQFLTILPEELQAW--VREHCPES 131
>BC025241-1|AAH25241.1| 561|Homo sapiens zinc finger protein 394
protein.
Length = 561
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 13 WQHNEDMSSPDAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQKVLFKGRCLEEWF 72
W+ N +SPD E +++ V E S + + R L ++L K + LE
Sbjct: 49 WEPNYPAASPDPETSRLHFRQLRYQEVAGPEEALSRLRELCRRWLRPELLSKEQILELLV 108
Query: 73 FD-FGYVIPNSTNTWQSVIESAPES 96
+ F ++P W V E PES
Sbjct: 109 LEQFLTILPEELQAW--VREHCPES 131
>BC017051-1|AAH17051.1| 162|Homo sapiens ZNF394 protein protein.
Length = 162
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 13 WQHNEDMSSPDAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQKVLFKGRCLEEWF 72
W+ N +SPD E +++ V E S + + R L ++L K + LE
Sbjct: 49 WEPNYPAASPDPETSRLHFRQLRYQEVAGPEEALSRLRELCRRWLRPELLSKEQILELLV 108
Query: 73 FD-FGYVIPNSTNTWQSVIESAPES 96
+ F ++P W V E PES
Sbjct: 109 LEQFLTILPEELQAW--VREHCPES 131
>AY642122-1|AAT67053.1| 561|Homo sapiens zinc finger protein 394
protein.
Length = 561
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 13 WQHNEDMSSPDAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQKVLFKGRCLEEWF 72
W+ N +SPD E +++ V E S + + R L ++L K + LE
Sbjct: 49 WEPNYPAASPDPETSRLHFRQLRYQEVAGPEEALSRLRELCRRWLRPELLSKEQILELLV 108
Query: 73 FD-FGYVIPNSTNTWQSVIESAPES 96
+ F ++P W V E PES
Sbjct: 109 LEQFLTILPEELQAW--VREHCPES 131
>AY261374-1|AAP94877.1| 217|Homo sapiens truncated zinc finger
protein isoform protein.
Length = 217
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 13 WQHNEDMSSPDAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQKVLFKGRCLEEWF 72
W+ N +SPD E +++ V E S + + R L ++L K + LE
Sbjct: 49 WEPNYPAASPDPETSRLHFRQLRYQEVAGPEEALSRLRELCRRWLRPELLSKEQILELLV 108
Query: 73 FD-FGYVIPNSTNTWQSVIESAPES 96
+ F ++P W V E PES
Sbjct: 109 LEQFLTILPEELQAW--VREHCPES 131
>AK222948-1|BAD96668.1| 561|Homo sapiens zinc finger protein 99
variant protein.
Length = 561
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 13 WQHNEDMSSPDAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQKVLFKGRCLEEWF 72
W+ N +SPD E +++ V E S + + R L ++L K + LE
Sbjct: 49 WEPNYPAASPDPETSRLHFRQLRYQEVAGPEEALSRLRELCRRWLRPELLSKEQILELLV 108
Query: 73 FD-FGYVIPNSTNTWQSVIESAPES 96
+ F ++P W V E PES
Sbjct: 109 LEQFLTILPEELQAW--VREHCPES 131
>AK022360-1|BAB14021.1| 561|Homo sapiens protein ( Homo sapiens
cDNA FLJ12298 fis, clone MAMMA1001837, weakly similar to
ZINC FINGER PROTEIN 29. ).
Length = 561
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 13 WQHNEDMSSPDAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQKVLFKGRCLEEWF 72
W+ N +SPD E +++ V E S + + R L ++L K + LE
Sbjct: 49 WEPNYPAASPDPETSRLHFRQLRYQEVAGPEEALSRLRELCRRWLRPELLSKEQILELLV 108
Query: 73 FD-FGYVIPNSTNTWQSVIESAPES 96
+ F ++P W V E PES
Sbjct: 109 LEQFLTILPEELQAW--VREHCPES 131
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.322 0.135 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,999,643
Number of Sequences: 224733
Number of extensions: 702154
Number of successful extensions: 1081
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1067
Number of HSP's gapped (non-prelim): 29
length of query: 131
length of database: 73,234,838
effective HSP length: 82
effective length of query: 49
effective length of database: 54,806,732
effective search space: 2685529868
effective search space used: 2685529868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
- SilkBase 1999-2023 -