Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000879-TA|BGIBMGA000879-PA|IPR008015|GMP
phosphodiesterase, delta subunit
(131 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14635-12|AAC46655.1| 159|Caenorhabditis elegans Phosphodiester... 204 2e-53
Z73428-1|CAA97807.1| 219|Caenorhabditis elegans Hypothetical pr... 44 5e-05
U32854-1|AAC46919.1| 219|Caenorhabditis elegans unc-119 protein. 44 5e-05
Z93385-8|CAB07643.1| 702|Caenorhabditis elegans Hypothetical pr... 30 0.46
Z81114-7|CAB03290.1| 702|Caenorhabditis elegans Hypothetical pr... 30 0.46
U88179-4|AAU05547.1| 576|Caenorhabditis elegans Hypothetical pr... 29 1.4
U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical pr... 29 1.4
U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical pr... 29 1.4
U00032-10|AAA50637.1| 418|Caenorhabditis elegans Hypothetical p... 27 5.7
U29381-7|AAA68755.1| 225|Caenorhabditis elegans Hypothetical pr... 26 10.0
>U14635-12|AAC46655.1| 159|Caenorhabditis elegans Phosphodiesterase
delta-like protein1 protein.
Length = 159
Score = 204 bits (497), Expect = 2e-53
Identities = 87/130 (66%), Positives = 112/130 (86%)
Query: 1 MNLRDADTGKILWQHNEDMSSPDAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQK 60
MNLRDA+TGK+LWQ EDM+ P EH+A VPK +LKCR VSRE+NF+S +++FRLEQ+
Sbjct: 29 MNLRDAETGKVLWQSTEDMADPKREHKAHVPKNLLKCRTVSREINFTSSVKIEKFRLEQR 88
Query: 61 VLFKGRCLEEWFFDFGYVIPNSTNTWQSVIESAPESQMMPANVLNGNVVIETKFFDGDLL 120
V KG +EEW+FDFG+VIP+STNTWQ++IE+APESQM P +VL+GNVV+ET F+DGDLL
Sbjct: 89 VYLKGTIIEEWYFDFGFVIPDSTNTWQNMIEAAPESQMFPPSVLSGNVVVETLFYDGDLL 148
Query: 121 ITTSRVRLFY 130
++TSRVRL+Y
Sbjct: 149 VSTSRVRLYY 158
>Z73428-1|CAA97807.1| 219|Caenorhabditis elegans Hypothetical
protein M142.1 protein.
Length = 219
Score = 43.6 bits (98), Expect = 5e-05
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 3 LRDADTGKILWQ----HNEDMSSPDAEHEA------RVPKRILKCRVVSREMNFSSIE-S 51
+RD DT +L++ NE + A+ E+ R LK + V + F +
Sbjct: 77 IRDLDTEHVLFEIAKPENETEENLQAQAESARYVRYRFAPNFLKLKTVGATVEFKVGDVP 136
Query: 52 MDRFRLEQKVLFKGRCLEEWFFDFGYVIPNSTNTWQSVIESAPESQMMPANVLN 105
+ FR+ ++ FK R L+ + F+FG+ +PNS N + + E SQ + +++N
Sbjct: 137 ITHFRMIERHFFKDRLLKCFDFEFGFCMPNSRNNCEHIYEFPQLSQQLMDDMIN 190
>U32854-1|AAC46919.1| 219|Caenorhabditis elegans unc-119 protein.
Length = 219
Score = 43.6 bits (98), Expect = 5e-05
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 3 LRDADTGKILWQ----HNEDMSSPDAEHEA------RVPKRILKCRVVSREMNFSSIE-S 51
+RD DT +L++ NE + A+ E+ R LK + V + F +
Sbjct: 77 IRDLDTEHVLFEIAKPENETEENLQAQAESARYVRYRFAPNFLKLKTVGATVEFKVGDVP 136
Query: 52 MDRFRLEQKVLFKGRCLEEWFFDFGYVIPNSTNTWQSVIESAPESQMMPANVLN 105
+ FR+ ++ FK R L+ + F+FG+ +PNS N + + E SQ + +++N
Sbjct: 137 ITHFRMIERHFFKDRLLKCFDFEFGFCMPNSRNNCEHIYEFPQLSQQLMDDMIN 190
>Z93385-8|CAB07643.1| 702|Caenorhabditis elegans Hypothetical
protein M01E5.6 protein.
Length = 702
Score = 30.3 bits (65), Expect = 0.46
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 30 VPKRILKCRVVSREMNFSSIESMDRFRLEQKVLFKGRCLEEWFFDFGYVIPNSTNTWQSV 89
+P + L C+ + E + S ++ LE VLF + F Y T+ + V
Sbjct: 53 IPHKCLICQPILTEKHISPYYAVYSDLLEDFVLFGYNTMTGKMEQFIYAF--KTDCFVEV 110
Query: 90 IESAPESQMMPANVLNGNVVIETKFFDGDLLI 121
+ PE + PA ++ GNVV+ +G+L++
Sbjct: 111 --NRPEIKYNPAFLVKGNVVVALNGPEGELVV 140
>Z81114-7|CAB03290.1| 702|Caenorhabditis elegans Hypothetical
protein M01E5.6 protein.
Length = 702
Score = 30.3 bits (65), Expect = 0.46
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 30 VPKRILKCRVVSREMNFSSIESMDRFRLEQKVLFKGRCLEEWFFDFGYVIPNSTNTWQSV 89
+P + L C+ + E + S ++ LE VLF + F Y T+ + V
Sbjct: 53 IPHKCLICQPILTEKHISPYYAVYSDLLEDFVLFGYNTMTGKMEQFIYAF--KTDCFVEV 110
Query: 90 IESAPESQMMPANVLNGNVVIETKFFDGDLLI 121
+ PE + PA ++ GNVV+ +G+L++
Sbjct: 111 --NRPEIKYNPAFLVKGNVVVALNGPEGELVV 140
>U88179-4|AAU05547.1| 576|Caenorhabditis elegans Hypothetical
protein R57.1b protein.
Length = 576
Score = 28.7 bits (61), Expect = 1.4
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 9 GKILWQHNEDMSSPDAEHEARVPKRI-LKCRVVSR-EMNFSSIESMDRFRLEQKVLFKGR 66
G IL+ +D++ E E PK+I + V R + +++ + +K LFKGR
Sbjct: 212 GAILFSDTQDVAQDGVESENVYPKKIWMPNEGVQRGSLMHGDGDALSPYYPSKKELFKGR 271
Query: 67 CLEE 70
+EE
Sbjct: 272 TIEE 275
>U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical
protein R57.1c protein.
Length = 751
Score = 28.7 bits (61), Expect = 1.4
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 9 GKILWQHNEDMSSPDAEHEARVPKRI-LKCRVVSR-EMNFSSIESMDRFRLEQKVLFKGR 66
G IL+ +D++ E E PK+I + V R + +++ + +K LFKGR
Sbjct: 212 GAILFSDTQDVAQDGVESENVYPKKIWMPNEGVQRGSLMHGDGDALSPYYPSKKELFKGR 271
Query: 67 CLEE 70
+EE
Sbjct: 272 TIEE 275
>U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical
protein R57.1a protein.
Length = 770
Score = 28.7 bits (61), Expect = 1.4
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 9 GKILWQHNEDMSSPDAEHEARVPKRI-LKCRVVSR-EMNFSSIESMDRFRLEQKVLFKGR 66
G IL+ +D++ E E PK+I + V R + +++ + +K LFKGR
Sbjct: 231 GAILFSDTQDVAQDGVESENVYPKKIWMPNEGVQRGSLMHGDGDALSPYYPSKKELFKGR 290
Query: 67 CLEE 70
+EE
Sbjct: 291 TIEE 294
>U00032-10|AAA50637.1| 418|Caenorhabditis elegans Hypothetical
protein F37A4.9 protein.
Length = 418
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 21 SPDAEHEARV-PKRILKCRVVSREMNFSSIESMDRFRLE 58
SP + E R P + CR V E +F++ S++RF ++
Sbjct: 20 SPSGKSEKRKSPSIVSGCRTVMNERSFTNYWSVERFTVQ 58
>U29381-7|AAA68755.1| 225|Caenorhabditis elegans Hypothetical
protein F35D11.9 protein.
Length = 225
Score = 25.8 bits (54), Expect = 10.0
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 15 HNEDMSSPDAEHEARVPKRILKCRVVS 41
HN +S+P+ HE + +++ R +S
Sbjct: 65 HNASLSNPENSHELEIVSDVIRARNIS 91
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.135 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,364,937
Number of Sequences: 27539
Number of extensions: 129584
Number of successful extensions: 286
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 10
length of query: 131
length of database: 12,573,161
effective HSP length: 74
effective length of query: 57
effective length of database: 10,535,275
effective search space: 600510675
effective search space used: 600510675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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