Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000879-TA|BGIBMGA000879-PA|IPR008015|GMP
phosphodiesterase, delta subunit
(131 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23230.1 68414.m02906 expressed protein 27 3.1
At4g39753.1 68417.m05629 kelch repeat-containing F-box family pr... 27 4.1
At1g23935.1 68414.m03020 apoptosis inhibitory protein 5 (API5)-r... 27 4.1
At5g28160.1 68418.m03403 kelch repeat-containing F-box family pr... 27 5.4
At1g49510.1 68414.m05549 expressed protein 26 7.1
At5g64270.1 68418.m08074 splicing factor, putative similar to sp... 26 9.4
At5g06550.1 68418.m00739 transcription factor jumonji (jmjC) dom... 26 9.4
At1g19200.1 68414.m02390 senescence-associated protein-related s... 26 9.4
At1g15100.1 68414.m01803 zinc finger (C3HC4-type RING finger) fa... 26 9.4
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 8 TGKILWQHNEDMSSPDAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQKVLFKGRC 67
T KIL H ED +S ++ + + C+ + S+ + R L + L KG+
Sbjct: 572 TRKILSFHREDRNSDPNNPQSVLLDFVSSCQ----NLRIWSLSTTTRAYLNNEQLLKGKQ 627
Query: 68 LEEWF 72
++EW+
Sbjct: 628 IDEWW 632
>At4g39753.1 68417.m05629 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 390
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 58 EQKVLFKGRCLEEWFFDFGYVIPNSTNTWQSVIESAPESQMMPANVLNGNVVIETKFF 115
++K+ G C E ++G V T TW+ + +PE + ++++ +I+ KF+
Sbjct: 191 DRKIYVMGGCAETESANWGEVFDPKTQTWEPLPVPSPELRF--SSMIRKIEMIQGKFY 246
>At1g23935.1 68414.m03020 apoptosis inhibitory protein 5
(API5)-related contains weak hit to Pfam profile
PF05918: Apoptosis inhibitory protein 5 (API5)
Length = 660
Score = 27.1 bits (57), Expect = 4.1
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 84 NTWQSVIESAPESQMMPANVLNGNVVIET 112
NTW+ V+E+ + Q++ A++LN + ++ T
Sbjct: 473 NTWKDVVEALQKQQIVGADLLNYSQLMMT 501
>At5g28160.1 68418.m03403 kelch repeat-containing F-box family
protein low similarity to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 324
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 60 KVLFKGRCLEEWFFDFGYVIPNSTNTWQSVIESAPE 95
K+ G C+ + ++G V T TW+++ + PE
Sbjct: 170 KIYVMGGCMADESVNWGEVFDIKTQTWEALPDPGPE 205
>At1g49510.1 68414.m05549 expressed protein
Length = 240
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 14 QHNEDMSSPDAEHEARVPKRILKCRVVSREMNFS 47
++N+D S A +EA+V KR L CR + E S
Sbjct: 32 KNNKDCSFQSA-NEAKVSKRSLLCRAIHMESGHS 64
>At5g64270.1 68418.m08074 splicing factor, putative similar to
splicing factor 3B subunit 1 (Spliceosome associated
protein 155) (SAP 155) (SF3b155) (Pre-mRNA splicing
factor SF3b 155 kDa subunit) (146 kDa nuclear protein)
SP:O57683 from [Xenopus laevis]
Length = 1269
Score = 25.8 bits (54), Expect = 9.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 9 GKILWQHNEDMSSPDAEHEARVPKRILKCR 38
G +L + NE+ SP+ + E ++ K +LK +
Sbjct: 440 GSLLNEENEEELSPEEQKERKIMKLLLKVK 469
>At5g06550.1 68418.m00739 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam PF00646: F-box
domain; contains Pfam PF02373: jmjC domain; similar to
apoptotic cell clearance receptor PtdSerR (GI:11037740)
[Mus musculus]
Length = 319
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 77 YVIPNSTNTWQSVIESAPESQMMPANVL 104
++ PNST+ W +VI + + + P +V+
Sbjct: 141 HIDPNSTSAWNAVITGSKKWVLFPPDVV 168
>At1g19200.1 68414.m02390 senescence-associated protein-related
similar to senescence-associated protein SAG102
(GI:22331931) [Arabidopsis thaliana];
Length = 215
Score = 25.8 bits (54), Expect = 9.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 73 FDFGYVIPNSTNTWQSVIESAPESQMMPANVL 104
F+FG+ + N W+ IE A ES VL
Sbjct: 113 FEFGHNLLNGDQRWRKPIEIAEESPAKERRVL 144
>At1g15100.1 68414.m01803 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 155
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 56 RLEQKVLFKGRCLEEWFFDFGYVIP 80
+LE + +F +CLE W F + P
Sbjct: 101 KLECRHVFHKKCLEGWLHQFNFTCP 125
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.322 0.135 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,234,330
Number of Sequences: 28952
Number of extensions: 123959
Number of successful extensions: 268
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 9
length of query: 131
length of database: 12,070,560
effective HSP length: 74
effective length of query: 57
effective length of database: 9,928,112
effective search space: 565902384
effective search space used: 565902384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
- SilkBase 1999-2023 -