Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000878-TA|BGIBMGA000878-PA|undefined
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    35   0.045
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    27   9.0  

>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 34.7 bits (76), Expect = 0.045
 Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 263 SSRQLCAGEYRFDRVCPRFITLRPPASISIGKLDLVQEGIIVLQEREFCEGASTLCR--- 319
           S RQLC  EY F R+CP F  L     ISI K     E + V +  E      TL R   
Sbjct: 85  SERQLCL-EYIFSRMCPNF-NLETKNLISISKKLSENENLPVSKIAEVTNELDTLVRIND 142

Query: 320 ALRANSLQGVVAQTHASS 337
            L  N + G   +  +SS
Sbjct: 143 QLSRNHISGTTEEMQSSS 160


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 10/121 (8%)

Query: 373 VFGAGDKAESYVLALR-ELGIEASEAPHSGA---PVCVLSEPVHCDTP---TVTNALDGV 425
           +F    K +  +  ++ +L +EA+E     A   P   LS+ +    P    + N L  +
Sbjct: 462 LFAKSTKLKQIIAKIKSDLEVEANENAKMKAKLGPSWTLSDSLEFAAPYQSELNNYLKTL 521

Query: 426 VAALATPP---NSYSAVTDPIDLVCGRGGDLAMLESPLKHGIENIESLTTLDNTISEGDR 482
             A AT       Y+ V D ++ +C      A+LES +     + +SL  +     E +R
Sbjct: 522 AEASATDSAISQQYALVKDDVETLCNSSKISALLESSISSTDNSGQSLLDIPIEQEEQER 581

Query: 483 D 483
           D
Sbjct: 582 D 582


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,372
Number of Sequences: 5004
Number of extensions: 100790
Number of successful extensions: 220
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 2
length of query: 716
length of database: 2,362,478
effective HSP length: 78
effective length of query: 638
effective length of database: 1,972,166
effective search space: 1258241908
effective search space used: 1258241908
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)