Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000878-TA|BGIBMGA000878-PA|undefined
         (716 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC024009-1|AAH24009.3|  725|Homo sapiens leucine rich repeat con...    32   8.1  
AK058059-1|BAB71645.1|  524|Homo sapiens protein ( Homo sapiens ...    32   8.1  

>BC024009-1|AAH24009.3|  725|Homo sapiens leucine rich repeat
           containing 50 protein.
          Length = 725

 Score = 31.9 bits (69), Expect = 8.1
 Identities = 18/44 (40%), Positives = 22/44 (50%)

Query: 95  VPAKNPHAPPPVSVKTTGPVWDIGQVLKAARLLCKPPQQVDFED 138
           +PA+ P  PPPV VK      +    L A  LL  PP +V  ED
Sbjct: 442 LPAEAPPPPPPVEVKGEDGDQEPEGTLPAETLLLSPPVKVKGED 485


>AK058059-1|BAB71645.1|  524|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25330 fis, clone TST00576. ).
          Length = 524

 Score = 31.9 bits (69), Expect = 8.1
 Identities = 18/44 (40%), Positives = 22/44 (50%)

Query: 95  VPAKNPHAPPPVSVKTTGPVWDIGQVLKAARLLCKPPQQVDFED 138
           +PA+ P  PPPV VK      +    L A  LL  PP +V  ED
Sbjct: 241 LPAEAPPPPPPVEVKGEDGDQEPEGTLPAETLLLSPPVKVKGED 284


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.136    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,890,105
Number of Sequences: 224733
Number of extensions: 3325185
Number of successful extensions: 6158
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6157
Number of HSP's gapped (non-prelim): 3
length of query: 716
length of database: 73,234,838
effective HSP length: 95
effective length of query: 621
effective length of database: 51,885,203
effective search space: 32220711063
effective search space used: 32220711063
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 69 (31.9 bits)