GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000878-TA|BGIBMGA000878-PA|undefined
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1222 + 27145264-27148287                                         31   3.2  
02_05_0774 + 31667839-31668540                                         31   3.2  
07_03_0712 - 20878272-20879633                                         31   4.2  
02_04_0216 + 20986231-20988021                                         31   4.2  
06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720...    30   5.6  
10_08_0621 + 19328357-19329545,19329967-19329986                       29   9.8  
07_01_0497 + 3731842-3732386,3732487-3732808,3733232-3733474           29   9.8  

>12_02_1222 + 27145264-27148287
          Length = 1007

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 7/122 (5%)

Query: 360 PPAPAIPELGRLVVFGAGDKAESYVLAL----RELGIEASEAPHSGAPVCVLSEPVHCDT 415
           PP+  +P L  L+   A   A S V AL      L I  + A          + P +   
Sbjct: 3   PPSLLLPPLLLLLGLHAAAAAVSEVSALMAFKNALTIPPTAAAFFARWDAAAASPCNFTG 62

Query: 416 PTVTNALDGVVAALATPPNSYSAVTDPIDLVCGRGGDLAMLESP---LKHGIENIESLTT 472
               N+  G V A+A      +A + P D++CG    LA L  P   L  GI  +   T 
Sbjct: 63  VDCANSGGGGVTAVAVEGLGVAATSVPFDVLCGSLPSLAKLSLPSNALAGGIGGVAGCTA 122

Query: 473 LD 474
           L+
Sbjct: 123 LE 124


>02_05_0774 + 31667839-31668540
          Length = 233

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 315 STLCRALRANSLQGVVAQTHAS-----SPRCSAYLAAQLKELAAVLKAQTPPAPAIPELG 369
           + +C++L  +S +   A++ AS     SP+CSA    +    A      TP +P +PE+ 
Sbjct: 142 TAICQSLATSSSKNTPAESAASAAEPESPKCSASTEGEDSVSAGSPPPPTPLSPPVPEME 201

Query: 370 RLVVFGA-GDKAESYVL 385
           +L    A  D++E++ L
Sbjct: 202 KLDFTEAPWDESETFHL 218


>07_03_0712 - 20878272-20879633
          Length = 453

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 391 GIEASEAPHSGAPVCVLSEPVHCDTPTVTNALDGVVAALATPPNSYSAVTD 441
           G E + +  S +P   +S P   D P     +  +  A+ TPP SY A+ D
Sbjct: 62  GRELASSSSSSSPAGTVSAPTRKDLPNGGEYI--MTLAIGTPPQSYPAIAD 110


>02_04_0216 + 20986231-20988021
          Length = 596

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 359 TPPAPAIPELGRLVVFGAGDKAESYVLALRELGIEASEAPHSGAPV-CVLSEPVHCDTPT 417
           TPP PA           A       VLAL E  I A +    GA V  +L +        
Sbjct: 6   TPPWPAAAAAAPASAAAASAVTVEAVLALLERAISAGDVRRLGAAVHALLVKTALTHHTL 65

Query: 418 VTNALDGVVAALATPPNSYSAVTD 441
           ++N L  + A L TP  S +A  D
Sbjct: 66  LSNRLVALYALLPTPAASLAAFDD 89


>06_03_0526 +
           21771519-21771607,21771685-21771810,21771890-21772010,
           21772123-21772851,21772954-21773349,21774594-21774665,
           21774741-21774803,21775236-21775337
          Length = 565

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 7/152 (4%)

Query: 288 ASISIGKLDLVQEGIIVLQEREFCEGASTLCRALRANSLQGVVAQTHASSPRCSAYLAAQ 347
           A + + + DL     + +Q++ + E  + +   +  +S +  V  + AS+   +A +   
Sbjct: 84  ACMELTEHDLAASASLQVQQQFYHETGTKMAVFMGCDSGEIEVGLSAASATATAAVVGEM 143

Query: 348 LKELAAVLKAQTPPAPAIPELGRLVVFGAGDKAESYVLALRELGIEASEAP-----HSGA 402
            + +   L  Q PP P  P    L+    G    S ++      + AS A      H G 
Sbjct: 144 QQSILEEL-LQMPPPPPSPSSSSLLSLSVGSPEYSSLVRSMATSVGASAAADPSPVHGGL 202

Query: 403 PVCVLSE-PVHCDTPTVTNALDGVVAALATPP 433
              V  E P   D   +  A+  V++  A PP
Sbjct: 203 LAPVYGEFPGSDDDAAMAQAMLAVISTPAPPP 234


>10_08_0621 + 19328357-19329545,19329967-19329986
          Length = 402

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 382 SYVLALRELGI--EASEAPHSGAPVCVLSEPVHCDTPTVTNALDGVVAALATPPNSYSAV 439
           SYV  L ++ I  E + +   G  V + SE ++  T T +  L  ++A L   P     +
Sbjct: 160 SYVDTLLDVKIPEEGNRSLTDGEIVTLCSEFLNAGTDTTSTGLQWIMAELVKNPAVQEKL 219

Query: 440 TDPIDLVCGRGGDL 453
              I+  CG  G+L
Sbjct: 220 HAEINATCGDDGEL 233


>07_01_0497 + 3731842-3732386,3732487-3732808,3733232-3733474
          Length = 369

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 367 ELGRLVVFGAGDKAESYV--LALRELGIEASEAPHSGAPVCVLSEPVHCDTPTVTNALDG 424
           EL RL+  G G + + +   L   ++ I  +  P    P   L  P HCD   +T  L G
Sbjct: 198 ELLRLLCEGMGLRPDYFERDLTAGDVIINVNHYPPCPDPSLTLGLPPHCDRNLITLLLQG 257

Query: 425 VVAALATPPNSYSAVTDPI 443
            V  L    N      DP+
Sbjct: 258 DVFGLQVSYNGDWINVDPV 276


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.136    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,986,353
Number of Sequences: 37544
Number of extensions: 712363
Number of successful extensions: 1764
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1764
Number of HSP's gapped (non-prelim): 7
length of query: 716
length of database: 14,793,348
effective HSP length: 87
effective length of query: 629
effective length of database: 11,527,020
effective search space: 7250495580
effective search space used: 7250495580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)