GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000878-TA|BGIBMGA000878-PA|undefined
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.8  
SB_3061| Best HMM Match : Tropomodulin (HMM E-Value=0.032)             30   5.6  
SB_57322| Best HMM Match : DNA_pol_A (HMM E-Value=1.7e-07)             30   5.6  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         30   7.5  
SB_22003| Best HMM Match : Ank (HMM E-Value=1.8e-39)                   30   7.5  
SB_52234| Best HMM Match : BRF1 (HMM E-Value=0.85)                     29   9.9  

>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 136 FEDEQEMRFVYSVIYDVFRYKCVL-DQAMDDIEFLADYPQYTGNRHIVWLFL 186
           F+D+ E R  YS+ +   RY+ VL D  +D   F + +   T ++H V++ L
Sbjct: 109 FDDDLERRRAYSMAFGAKRYELVLEDVLLDSYFFSSFFKMETYHKHRVYVML 160


>SB_3061| Best HMM Match : Tropomodulin (HMM E-Value=0.032)
          Length = 614

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 418 VTNALDGVVAALATPPNSYSAVTDPIDLVCGRGGD--LAMLESPLKHGIENIESLTTLDN 475
           +  ALDG+   L  P    + + + ++L C  G D  +A +   LK+ +     + + D 
Sbjct: 106 IDRALDGLCLLLGQPEIEATGI-ERLNLCCLSGFDKRVAKIAFELKNNLSLRTLIISSDG 164

Query: 476 TISEGDRDDQTDDEFD 491
               GD DD  DD+ D
Sbjct: 165 APYVGDDDDDDDDDDD 180


>SB_57322| Best HMM Match : DNA_pol_A (HMM E-Value=1.7e-07)
          Length = 246

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)

Query: 130 PPQQVDFED-EQEMRFVYSVIYDVFR 154
           PP +VDF++ E+  R VYSVIY V R
Sbjct: 5   PPVKVDFKERERTKRIVYSVIYGVGR 30


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 22/70 (31%), Positives = 27/70 (38%)

Query: 304  VLQEREFCEGASTLCRALRANSLQGVVAQTHASSPRCSAYLAAQLKELAAVLKAQTPPAP 363
            VL  R+      TL     A S   V   T ++ P      AA L   A  L  +T P P
Sbjct: 988  VLPRRKTPLSPRTLSSFPIATSTTTVTTVTSSAKPLIRETCAATLPSPALKLSGKTKPTP 1047

Query: 364  AIPELGRLVV 373
            AIP  G   +
Sbjct: 1048 AIPSSGSTAI 1057


>SB_22003| Best HMM Match : Ank (HMM E-Value=1.8e-39)
          Length = 304

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 18/57 (31%), Positives = 26/57 (45%)

Query: 397 APHSGAPVCVLSEPVHCDTPTVTNALDGVVAALATPPNSYSAVTDPIDLVCGRGGDL 453
           A HSG P+ V S   H       ++       LA  PN   +V+D + L+C  G D+
Sbjct: 73  AVHSGNPLRVRSCLSHGAQVECVDSQGHTPLLLALSPNHGDSVSDIVSLLCSSGADV 129


>SB_52234| Best HMM Match : BRF1 (HMM E-Value=0.85)
          Length = 371

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 459 PLKHG--IENIESLTTLDNTISEGDRDDQTDDEFDS 492
           PL +G  I NI +L+  D+   +GD DD  DD+ D+
Sbjct: 129 PLSNGDIILNINTLSISDDDDDDGDDDDDDDDDDDT 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.136    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,144,401
Number of Sequences: 59808
Number of extensions: 770307
Number of successful extensions: 1820
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1815
Number of HSP's gapped (non-prelim): 10
length of query: 716
length of database: 16,821,457
effective HSP length: 87
effective length of query: 629
effective length of database: 11,618,161
effective search space: 7307823269
effective search space used: 7307823269
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)