GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000878-TA|BGIBMGA000878-PA|undefined
         (716 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2732|AAN11752.1|  739|Drosophila melanogaster CG13035-P...    89   2e-17
AE014296-2731|AAF49466.1|  717|Drosophila melanogaster CG13035-P...    89   2e-17
L05080-1|AAA28420.1|  873|Drosophila melanogaster calphotin prot...    30   9.7  

>AE014296-2732|AAN11752.1|  739|Drosophila melanogaster CG13035-PB,
           isoform B protein.
          Length = 739

 Score = 89.0 bits (211), Expect = 2e-17
 Identities = 57/185 (30%), Positives = 86/185 (46%), Gaps = 24/185 (12%)

Query: 273 RFDRVCPRFITLRPPASISIGKLDLVQEGIIVLQEREFCEGASTLCRALRANSLQGVVAQ 332
           ++D +CP  I+  P       K  L+ +   ++Q++ F  G + + + +    L G + Q
Sbjct: 311 KWDNICPLVISCIPKDRSEFTKSVLMSKHYFIMQDKNFTFGPAIMSKLMDYFELDGDILQ 370

Query: 333 THASSPRCSAYLAAQLKELAAVLKAQTPPAPAIPELGRLVVFGAGDKAESYVLALRELGI 392
           TH  SPR +AYLAA                 +I  +    V+GAG   + Y   +  +G+
Sbjct: 371 THIGSPRSTAYLAALFY--------------SINRVNNFYVYGAGANLKEYRRYMESIGV 416

Query: 393 EASEAPHSGAPVCVLSEPVHCDTPTVTNALDGVVAALATPPNSYSAVTDPIDLVCGRGGD 452
                         L        P  +N    VV   ATPPNS+SA++DPIDL+C RGGD
Sbjct: 417 NNIR----------LFGDAFTSFPMESNRFRTVVGIFATPPNSFSAISDPIDLICSRGGD 466

Query: 453 LAMLE 457
           L+MLE
Sbjct: 467 LSMLE 471



 Score = 77.0 bits (181), Expect = 9e-14
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 2/139 (1%)

Query: 112 GPVWDIGQVLKAARLLCKPPQQVDFEDEQEMRFVYSVIYDVFRYKCVLDQAMDDIEFLAD 171
           G  W +  +  AA+LL KPP  VDF++E EMR  +S+IYDVFRYK V+  A+ D+ F  +
Sbjct: 116 GARWTLPTIANAAKLLRKPPILVDFQNEHEMRLAFSLIYDVFRYKVVMSNALADVSFFEE 175

Query: 172 YPQYTGNRHIVWLFLMXXXXXXXXXXXXXXXXXXTQLLEGAGQPFKEMENVVWEQRVHFX 231
           + +   +   +WL L                    +L + +     E+ +++W+ R+   
Sbjct: 176 HTELKNDEQRIWLMLFELYDRQFKGRNSEEKDLQARLYKES--EVTELADLLWQHRIRLA 233

Query: 232 XXXXXXXXKNKALSKIALL 250
                   +  AL    LL
Sbjct: 234 ASISRMRIQVGALRLSQLL 252



 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 556 IFVPNCDLFEIATLPNLGNGLDINYILDRDGCYLGLIQRKEITRLDAKYMIRMAEERGLF 615
           I  P+ D F   T+P++    D        G YL L++RK +T L+ KY+IR AE+RGLF
Sbjct: 605 IVTPDIDEFVQDTVPDICINQDNCIKQQVTGSYLALVRRKTLTHLNEKYLIRRAEQRGLF 664

Query: 616 G 616
           G
Sbjct: 665 G 665


>AE014296-2731|AAF49466.1|  717|Drosophila melanogaster CG13035-PA,
           isoform A protein.
          Length = 717

 Score = 89.0 bits (211), Expect = 2e-17
 Identities = 57/185 (30%), Positives = 86/185 (46%), Gaps = 24/185 (12%)

Query: 273 RFDRVCPRFITLRPPASISIGKLDLVQEGIIVLQEREFCEGASTLCRALRANSLQGVVAQ 332
           ++D +CP  I+  P       K  L+ +   ++Q++ F  G + + + +    L G + Q
Sbjct: 311 KWDNICPLVISCIPKDRSEFTKSVLMSKHYFIMQDKNFTFGPAIMSKLMDYFELDGDILQ 370

Query: 333 THASSPRCSAYLAAQLKELAAVLKAQTPPAPAIPELGRLVVFGAGDKAESYVLALRELGI 392
           TH  SPR +AYLAA                 +I  +    V+GAG   + Y   +  +G+
Sbjct: 371 THIGSPRSTAYLAALFY--------------SINRVNNFYVYGAGANLKEYRRYMESIGV 416

Query: 393 EASEAPHSGAPVCVLSEPVHCDTPTVTNALDGVVAALATPPNSYSAVTDPIDLVCGRGGD 452
                         L        P  +N    VV   ATPPNS+SA++DPIDL+C RGGD
Sbjct: 417 NNIR----------LFGDAFTSFPMESNRFRTVVGIFATPPNSFSAISDPIDLICSRGGD 466

Query: 453 LAMLE 457
           L+MLE
Sbjct: 467 LSMLE 471



 Score = 77.0 bits (181), Expect = 9e-14
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 2/139 (1%)

Query: 112 GPVWDIGQVLKAARLLCKPPQQVDFEDEQEMRFVYSVIYDVFRYKCVLDQAMDDIEFLAD 171
           G  W +  +  AA+LL KPP  VDF++E EMR  +S+IYDVFRYK V+  A+ D+ F  +
Sbjct: 116 GARWTLPTIANAAKLLRKPPILVDFQNEHEMRLAFSLIYDVFRYKVVMSNALADVSFFEE 175

Query: 172 YPQYTGNRHIVWLFLMXXXXXXXXXXXXXXXXXXTQLLEGAGQPFKEMENVVWEQRVHFX 231
           + +   +   +WL L                    +L + +     E+ +++W+ R+   
Sbjct: 176 HTELKNDEQRIWLMLFELYDRQFKGRNSEEKDLQARLYKES--EVTELADLLWQHRIRLA 233

Query: 232 XXXXXXXXKNKALSKIALL 250
                   +  AL    LL
Sbjct: 234 ASISRMRIQVGALRLSQLL 252



 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 556 IFVPNCDLFEIATLPNLGNGLDINYILDRDGCYLGLIQRKEITRLDAKYMIRMAEERGLF 615
           I  P+ D F   T+P++    D        G YL L++RK +T L+ KY+IR AE+RGLF
Sbjct: 605 IVTPDIDEFVQDTVPDICINQDNCIKQQVTGSYLALVRRKTLTHLNEKYLIRRAEQRGLF 664

Query: 616 G 616
           G
Sbjct: 665 G 665


>L05080-1|AAA28420.1|  873|Drosophila melanogaster calphotin
           protein.
          Length = 873

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 1/119 (0%)

Query: 325 SLQGVVAQTHASSPRCSAYLAAQLKELAAVLKAQTPPAPAIPELGRLVVFGAGDKAESYV 384
           S+Q       A +P  +A +A        V+ A TPPA A P     V       A S  
Sbjct: 63  SVQPATVTVPAPAPIAAASVAPVASVAPPVVAAPTPPA-ASPVSTPPVAVAQIPVAVSAP 121

Query: 385 LALRELGIEASEAPHSGAPVCVLSEPVHCDTPTVTNALDGVVAALATPPNSYSAVTDPI 443
           +A          AP   A   + + PV    PT       V   +ATPP   +  T P+
Sbjct: 122 VAPPVAATPTPVAPIPVAAPVIATPPVAASAPTPAAVTPVVSPVIATPPVVPANTTVPV 180


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.319    0.136    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,198,589
Number of Sequences: 52641
Number of extensions: 1168596
Number of successful extensions: 2390
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2378
Number of HSP's gapped (non-prelim): 12
length of query: 716
length of database: 24,830,863
effective HSP length: 90
effective length of query: 626
effective length of database: 20,093,173
effective search space: 12578326298
effective search space used: 12578326298
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)