GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000878-TA|BGIBMGA000878-PA|undefined
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55940.1 68416.m06216 phosphoinositide-specific phospholipase...    32   1.5  
At3g09670.1 68416.m01146 PWWP domain-containing protein                30   6.2  

>At3g55940.1 68416.m06216 phosphoinositide-specific phospholipase C,
           putative similar to phosphoinositide specific
           phospholipase C GI:857374 from [Arabidopsis thaliana]
          Length = 584

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 432 PPNSYSAVTDPIDLVCGRGGDLAMLESPLKHGIENIESLTTLDNTISEGDRDDQTDDEFD 491
           PP  Y A TD  DLV  +G DL   E   +     I    ++D   S GD DD  DD+ D
Sbjct: 249 PPKEYKAATDD-DLV-KKGRDLGDKEVWGREVPSFIRRDRSVDKNDSNGDDDDDDDDDDD 306


>At3g09670.1 68416.m01146 PWWP domain-containing protein
          Length = 726

 Score = 29.9 bits (64), Expect = 6.2
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 9/69 (13%)

Query: 349 KELAAVLKAQTPPAPAIPELGRLVVFGAGDKAESYVLALRELGIEASEAPHSGAPVCVLS 408
           K++ A L+ + P +P  P+  R     AGDK      A +  GI        GA +  ++
Sbjct: 509 KKIKANLQTEDPGSPVSPKNDRKNNLSAGDKITPQK-ARKSFGI--------GASILKVA 559

Query: 409 EPVHCDTPT 417
             +HC TPT
Sbjct: 560 NQMHCSTPT 568


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.136    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,908,954
Number of Sequences: 28952
Number of extensions: 546291
Number of successful extensions: 1168
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1168
Number of HSP's gapped (non-prelim): 2
length of query: 716
length of database: 12,070,560
effective HSP length: 86
effective length of query: 630
effective length of database: 9,580,688
effective search space: 6035833440
effective search space used: 6035833440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)