Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000877-TA|BGIBMGA000877-PA|undefined
         (313 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    29   0.058
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    26   0.31 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   1.7  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    24   1.7  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   1.7  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   1.7  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    24   1.7  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           24   1.7  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   1.7  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    23   2.9  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   6.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.8  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 28.7 bits (61), Expect = 0.058
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 206 PQPQQQSVPSLGHGSAKYSINTLDSSISRSTGPP 239
           PQP   SVP LGH    ++  +L  S S  T  P
Sbjct: 66  PQPLHPSVPRLGHPQWPFAWGSLXRSSSPQTSAP 99


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 88  SPAMVKL-PGRKPCCLLTTRPTKSLGNLTLATSSTMKAVPNQNTTDVS 134
           SP  V   P  KP    T++   S  + T +TSST KA  N N +  S
Sbjct: 145 SPLSVSTSPPGKPATSTTSQNLSSPASSTSSTSSTEKAGTNNNNSKSS 192


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 88  SPAMVKL-PGRKPCCLLTTRPTKSLGNLTLATSSTMKAVPNQNTT 131
           SP  V   P  KP     ++   S  + T +TSST KA  N N +
Sbjct: 145 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNS 189


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 88  SPAMVKL-PGRKPCCLLTTRPTKSLGNLTLATSSTMKAVPNQNTT 131
           SP  V   P  KP     ++   S  + T +TSST KA  N N +
Sbjct: 145 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNS 189


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 88  SPAMVKL-PGRKPCCLLTTRPTKSLGNLTLATSSTMKAVPNQNTT 131
           SP  V   P  KP     ++   S  + T +TSST KA  N N +
Sbjct: 145 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNS 189


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 88  SPAMVKL-PGRKPCCLLTTRPTKSLGNLTLATSSTMKAVPNQNTT 131
           SP  V   P  KP     ++   S  + T +TSST KA  N N +
Sbjct: 145 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNS 189


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 88  SPAMVKL-PGRKPCCLLTTRPTKSLGNLTLATSSTMKAVPNQNTT 131
           SP  V   P  KP     ++   S  + T +TSST KA  N N +
Sbjct: 101 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNS 145


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 88  SPAMVKL-PGRKPCCLLTTRPTKSLGNLTLATSSTMKAVPNQNTT 131
           SP  V   P  KP     ++   S  + T +TSST KA  N N +
Sbjct: 145 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNS 189


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 88  SPAMVKL-PGRKPCCLLTTRPTKSLGNLTLATSSTMKAVPNQNTT 131
           SP  V   P  KP     ++   S  + T +TSST KA  N N +
Sbjct: 145 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNS 189


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 3   ILRYNENLDNTVNYVATLAFFCGI--SCVTI 31
           ILRY + + +T   +  + FFC +   C+T+
Sbjct: 238 ILRYTKIVSDTYQGILVVQFFCSLVALCLTM 268


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 226 NTLDSSISRSTGPPPYSETATELVT 250
           N ++S  S +  PPP ++   ++VT
Sbjct: 422 NNVNSPASMNQTPPPTAQMGLDMVT 446


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 81   PSPTKTLSPAMVKLPGRKPCCLLTTRP 107
            P  + T++P+   +   KP    T+RP
Sbjct: 2286 PDASSTMAPSTTPMVPDKPVTTTTSRP 2312


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.127    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,492
Number of Sequences: 317
Number of extensions: 2734
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 12
length of query: 313
length of database: 114,650
effective HSP length: 57
effective length of query: 256
effective length of database: 96,581
effective search space: 24724736
effective search space used: 24724736
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 43 (21.4 bits)