Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000877-TA|BGIBMGA000877-PA|undefined
(313 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 32 0.12
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 27 2.6
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 27 2.6
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 27 3.4
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 27 3.4
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.0
SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pomb... 26 8.0
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 8.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 8.0
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 31.9 bits (69), Expect = 0.12
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 50 NGKEKTELHQGSYMTGA--YRTNRDDVSGYVSTPSPTKTLSPAMVKLPGRKPCCLLTTRP 107
NG T + S T + + + +G ST S T T S ++ KLP LTT
Sbjct: 217 NGTNFTCIVNASNATNSTFWLNGTNSTNGTNSTNS-TSTTSHSLTKLPTSSKS--LTTSK 273
Query: 108 TKSLGNLTLATSSTMKAVPNQNTTDVSTDPRGD 140
T + G++T + NTTD +T+ D
Sbjct: 274 TTASGHITKGVMEALSTNDTTNTTDDATNTTSD 306
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 220 SAKYSINTLDSSISRSTGPPPYSETATELVTLDASDAT 257
S+ + N+ SS ST PP + T+T+ T+ +++AT
Sbjct: 171 SSSSTYNSTTSSYHNSTSTPPPTITSTKASTVTSTEAT 208
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 220 SAKYSINTLDSSISRSTGPPPYSETATELVTLDASDATRDVSFGKPIDTGTWDIVAEHRE 279
S+ +S+NT+ S S S G + +L+T D + DV P++ +++ EHR+
Sbjct: 90 SSPFSVNTIVSRESLSVGDALRELDSKQLITSDFILVSGDVVSNVPLN----EVLKEHRK 145
Query: 280 QLNRTTHAV 288
+ +A+
Sbjct: 146 RREDDKNAI 154
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 27.1 bits (57), Expect = 3.4
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 203 RKAP-QPQQQSVPSLGHGSAKYSINTLDSSISRSTGPPPYSETATELVTLDAS 254
+ AP P+ + SL S SIN ++S + PPP S +A+ TL S
Sbjct: 420 KSAPVSPRTAAAQSLLPNSVVSSINGMNSVNFSTISPPPLSRSASISPTLSGS 472
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 222 KYSINTLDSSISRSTGPPPYSETATELVTLDA 253
K TL + ++ +T PY++TAT LV +DA
Sbjct: 21 KTETTTLKNGLTVATEHHPYAQTATVLVGVDA 52
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 26.2 bits (55), Expect = 6.0
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 55 TELHQGSYMTGAYR-TNRDDVSGYVSTPSPTKTLSPAMVKLPGRKPCCLLTTRPTKSLG 112
+ L S +T +Y+ ++ VS + PT +PA+ KLP + P T R T S G
Sbjct: 391 SSLETPSVLTSSYKPSSSSKVSAKSVSRKPTG--APAIPKLPPKHPSRQPTVRATPSTG 447
>SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 214
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 224 SINTLDSSISRSTGPPPYSETATELVTLDASDATRDVSFGKPIDTGTWDIV 274
++ L SS + S P TE D + +++ KP+ G W IV
Sbjct: 141 TVRNLRSSQANSQSTQPRDPIPTE--NFDVRTPSYSINYKKPVPAGDWVIV 189
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 8.0
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 74 VSGYVSTPSPTKTLSPAMVKLPGRKPCCLLTTRPTKSLG---NLTLATSSTMKAVPNQNT 130
VS + S+PSPT + S TT+ T + T T++T + P +
Sbjct: 528 VSSFSSSPSPTSSFSGTSALSSSSNEETTTTTQVTYTTSPEETTTTMTTTTCSSRPEETI 587
Query: 131 TDVST 135
+ VST
Sbjct: 588 STVST 592
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 8.0
Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 4/141 (2%)
Query: 108 TKSLGNLTLATSSTMKAVPNQNTTDVSTDPRGDGDRDIKNPSHXXXXXXXXXXXXXXXXX 167
T S +++ TSS+ + P+ ++T +T P + S
Sbjct: 126 TVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 185
Query: 168 QKAIERTTREQAXXXXXXXXXXXXXXXXXXXXDKKRKAPQPQQQSVPSLGHGSAKYSINT 227
+ ++ + + S S S+ I T
Sbjct: 186 SSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSS--SSRPSSSSSFITT 243
Query: 228 LDSS--ISRSTGPPPYSETAT 246
+ SS IS T P S ++T
Sbjct: 244 MSSSTFISTVTVTPSSSSSST 264
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.127 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,303,103
Number of Sequences: 5004
Number of extensions: 50534
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 117
Number of HSP's gapped (non-prelim): 9
length of query: 313
length of database: 2,362,478
effective HSP length: 73
effective length of query: 240
effective length of database: 1,997,186
effective search space: 479324640
effective search space used: 479324640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 54 (25.8 bits)
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