Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000877-TA|BGIBMGA000877-PA|undefined
(313 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0525 - 19044978-19045508 31 0.90
09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664 30 2.1
07_03_0169 + 14670994-14673714,14673799-14673879,14675460-146756... 30 2.1
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823... 30 2.1
02_03_0246 - 16807619-16808145,16808208-16808868 29 3.6
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 29 3.6
05_03_0086 + 8279518-8280320,8280923-8281844 29 4.8
07_03_1595 + 28007003-28007031,28007978-28008560,28009088-28009399 28 8.4
>07_03_0525 - 19044978-19045508
Length = 176
Score = 31.5 bits (68), Expect = 0.90
Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 201 KKRKAPQPQQQSVPSLGHGSAKYSINTLDSSISRSTGPPPYSETATELVTLDASDATRDV 260
++R++ +P++ ++ + G +A+ T DS+ + + PP E V L + ++
Sbjct: 17 RRRRSRRPERVTIATTGRDAARRFATTADSTAAAAAAAPPSRERVRRRVVLPPASSSYRP 76
Query: 261 SFGKPIDTGTWDIVAEHREQLNRTTHA 287
+D W E+ E+ + A
Sbjct: 77 RHATALDV-KWSPWIENNEERSAAVFA 102
>09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664
Length = 332
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 55 TELHQGSYMTGAYRTNRDDVSGYVSTPSPTKTLSPAMVKLPGRKPCCLLTTRPTK-SLGN 113
TE+ G + A + D+ ++ T T+ A ++LP LL P +LG
Sbjct: 85 TEIEDGGGVETAKAVDGDEPQPFIRTVRSTRRRKAAAIRLPKAFRAALLPPPPPPCALGF 144
Query: 114 LTLATSSTMKAVPNQ 128
TS ++ +PN+
Sbjct: 145 TATTTSLMIRNIPNK 159
>07_03_0169 +
14670994-14673714,14673799-14673879,14675460-14675612,
14675910-14676073,14676162-14676309,14676426-14676548,
14676754-14676841,14677493-14677674
Length = 1219
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 214 PSLGHGSAKYSINTLDS--SISRSTGPPPYSETATELVTLDASDATRDVSFGKPI 266
PS GHG SIN LD +++ + P S + L ++ AS A P+
Sbjct: 302 PSSGHGLGNTSINELDQFINLNNDSNQPNSSRDGSNLYSMSASTAVPPALISVPL 356
>04_04_1704 -
35481041-35481461,35481682-35481810,35482291-35482397,
35482515-35482583,35482825-35482936,35483013-35483131,
35483211-35483291,35483629-35483700,35484039-35484239,
35484442-35484528,35485284-35485523,35485991-35486455,
35487434-35487556,35487643-35487769,35487851-35487919,
35488061-35488189,35488628-35488722,35488808-35488876,
35489332-35489443,35489545-35489663,35489753-35489833,
35490898-35490969,35491052-35491267,35491524-35491601,
35491694-35491831,35492403-35492414,35492639-35492872,
35493076-35493130,35493222-35493352,35493813-35494546,
35494613-35494820
Length = 1634
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 81 PSPTKTLSPAMVKLPGRKPCCLLTTRPTKSLGN 113
P P + PA VKL GR+ C L+T +S G+
Sbjct: 65 PPPPQEPEPAKVKLAGRRRLCKLSTAGDESAGD 97
>02_03_0246 - 16807619-16808145,16808208-16808868
Length = 395
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 260 VSFGKPIDTGTWDIVAEHREQLNRTTHAVDKNDKQTVIDLNYSAGSDDKTDNV 312
V G D G WD EHR ++ +V + + V D+++ GS K + V
Sbjct: 293 VDEGMRYDQGYWDRCREHRAEVTTWPLSVAGSPRFRVYDVDFGFGSPAKVEIV 345
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 202 KRKAPQPQQQSVPSLGHGSAKYSINTLDSSISRS--TGPPP 240
+RK P P S P + + SA S T D++I R+ PPP
Sbjct: 374 RRKPPSPSPPSSPLIENTSALRSTTTTDTTIPRNPFVQPPP 414
>05_03_0086 + 8279518-8280320,8280923-8281844
Length = 574
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 234 RSTGPPPYS-ETATELVTLDASDATRDVSFGKPIDTGTWDIVAEHREQLN 282
++ PPP ET LVT A+ AT + G+ + G+ D ++ + N
Sbjct: 54 KTANPPPQRPETTAALVTTTAAAATAGTNRGEAVSNGSLDSISSGSTRSN 103
>07_03_1595 + 28007003-28007031,28007978-28008560,28009088-28009399
Length = 307
Score = 28.3 bits (60), Expect = 8.4
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 90 AMVKLPGRKPCCLLTTRPTKSLGNL-TLATSSTMKAVPNQNTTDVSTDPRGDGDR 143
A V P R C L T T LGN+ LA S + AV T V+ DG R
Sbjct: 162 ARVMAPRRAGCILCTASSTAVLGNIGPLAYSMSKAAVVGMVQTTVARQLARDGVR 216
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.127 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,340,917
Number of Sequences: 37544
Number of extensions: 324080
Number of successful extensions: 683
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 8
length of query: 313
length of database: 14,793,348
effective HSP length: 82
effective length of query: 231
effective length of database: 11,714,740
effective search space: 2706104940
effective search space used: 2706104940
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 60 (28.3 bits)
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