GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000877-TA|BGIBMGA000877-PA|undefined
         (313 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38911| Best HMM Match : Laminin_G_2 (HMM E-Value=0.85)              32   0.70 
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               32   0.70 
SB_5551| Best HMM Match : Urease_beta (HMM E-Value=9.7)                30   2.8  
SB_13004| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)               29   3.7  
SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.7  
SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_5630| Best HMM Match : EB1_binding (HMM E-Value=1.8)                29   4.9  
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_41697| Best HMM Match : UPF0153 (HMM E-Value=5.1)                   29   6.5  
SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_51968| Best HMM Match : PT (HMM E-Value=0.54)                       29   6.5  
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_11265| Best HMM Match : LRR_1 (HMM E-Value=0.23)                    29   6.5  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_15222| Best HMM Match : Glycoprotein_G (HMM E-Value=0.84)           28   8.6  

>SB_38911| Best HMM Match : Laminin_G_2 (HMM E-Value=0.85)
          Length = 131

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 62  YMTGAYRTNRDDVSGYVSTPSPTKTLSPAMVKLPGRKPCCLLTTRPTKSLGNLTLATSST 121
           + TG Y  N+    G+  T +P  TL  AM K+P      + T  P  +   +TLA    
Sbjct: 6   FSTGDYAENK---LGFAVTVTPNDTLKLAMTKIPSGVSSVVTTPFPVATWNRVTLAILDD 62

Query: 122 MKAVPNQNTTDV 133
                + N T V
Sbjct: 63  STTFISVNDTSV 74


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 203  RKAPQPQQQSVPSLGHGSAKYSINTLDSSISRSTGPPPYSETATELVTLDASDATRDVSF 262
            ++A      S  S G  +   ++NTL  +  R T P P  E+  E+ + D S     VS 
Sbjct: 1006 KRARTSGDPSGESYGTKNRDRNMNTLPPTPPRYTRPTPDKESHQEICSSDFSKHIEQVSS 1065

Query: 263  GKPIDTGTWDIVAEHREQLNRTTHAVDKNDKQTVID 298
             K ID     +VA  R Q   T++     + + V D
Sbjct: 1066 SKTID---HSVVAPPRLQTINTSYCQAACNNENVCD 1098


>SB_5551| Best HMM Match : Urease_beta (HMM E-Value=9.7)
          Length = 91

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 243 ETATELVTLDASDATRDVSFGK-PIDTGTWDIVAEHREQLNRTTHAVDKN 291
           ET  +L+ LD    + DV+FGK  I  GT  I+A H ++++    A+ +N
Sbjct: 30  ETIPDLLELDHLTVSGDVTFGKGVILKGTVIIIANHGDRIDIPAGAILEN 79


>SB_13004| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)
          Length = 636

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 70  NRDDVSGYVSTPSPTKTLSPAMVKLPGRKPCCLLTTRPTKSLGNLTLATSSTMKAVPNQN 129
           N D+V   V+TPSP   + P++      +    ++  PT       +  S+T + VP  N
Sbjct: 484 NNDNVPS-VNTPSPV--VPPSVASTSSPQSASSMSQNPTNIDPTQVVPPSNTTQVVPPPN 540

Query: 130 TTDVSTDP 137
            T  S +P
Sbjct: 541 ITHPSNEP 548


>SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1816

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 70  NRDDVSGYVSTPSPTKTLSPAMVKLPGRKPCCLLTTRPTKSLGNLTLATSSTMKAVPNQN 129
           N D+V   V+TPSP   + P +      +    ++  PT       L  S+T + VP  N
Sbjct: 433 NNDNVPS-VNTPSPV--VPPPVAPTSSPQSASSMSQNPTNIDPTQVLPPSNTTQVVPPPN 489

Query: 130 TTDVSTDP 137
            T  S +P
Sbjct: 490 ITHPSNEP 497


>SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 70  NRDDVSGYVSTPSPTKTLSPAMVKLPGRKPCCLLTTRPTKSLGNLTLATSSTMKAVPNQN 129
           N D+V   V+TPSP   + P++      +    ++  PT       +  S+T + VP  N
Sbjct: 100 NNDNVPS-VNTPSPV--VPPSVASTSSPQSASSMSQNPTNIDPTQVVPPSNTTQVVPPPN 156

Query: 130 TTDVSTDP 137
            T  S +P
Sbjct: 157 ITHPSNEP 164


>SB_5630| Best HMM Match : EB1_binding (HMM E-Value=1.8)
          Length = 310

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 47/236 (19%), Positives = 83/236 (35%), Gaps = 15/236 (6%)

Query: 55  TELHQGSYMTGAYRTNRDDVSGYVSTPSPTKTLSPAMVKLPGRKPCCLLTTRP-TKSLGN 113
           T   QG+Y    YR   +      +    T+ ++ ++     R+    LTT   T S+ N
Sbjct: 71  TRKQQGAYYRSDYRILSNSTRRESNEELTTEAITGSVSNSTRRESNKELTTEAITGSVSN 130

Query: 114 LTLATSS---TMKAVPNQNTTDVSTDPRGDGDRDIKNPSHXXXXXXXXXXXXXXXXXQKA 170
            T   S+   T KA+    T  VS   R + ++++   +                   KA
Sbjct: 131 STRQESNEELTTKAI----TGSVSNSTRQESNKELTTEAITGSVSNSTRRESNEELTTKA 186

Query: 171 I----ERTTREQAXXXXXXXXXXXXXXXXXXXXDKKRKAPQPQQQSVPSLGHGSAKYSIN 226
           I      +TR ++                      +    +    SV +     +   + 
Sbjct: 187 ITGSVSNSTRRESNEELTTGAITGSVSNSTRQESNEELTTKAITGSVSNSTRRESNKELT 246

Query: 227 T--LDSSISRSTGPPPYSETATELVTLDASDATRDVSFGKPIDTGTWDIVAEHREQ 280
           T  +  S+S ST      E  T+ +T   S++TR  S  K + TG   ++   RE+
Sbjct: 247 TGAITGSVSNSTRQESNEELTTKAITGSVSNSTRRES-NKELTTGAVRVIFVVRER 301


>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1069

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 64  TGAYRTNRDDVSGYVSTPSPTKTLSPAMVKLPGRKPCCLLTTRPTKSLGNLTLATSSTMK 123
           T +    +    G VS   PTK  +P  V  PG K     T  P    G+    T   + 
Sbjct: 420 TSSPGATQGSTDGVVSAKPPTKKTTPQSVIPPG-KTTAPTTKPPGSPAGSTQGPTDGVLS 478

Query: 124 A-VPNQNTTDVSTDPRG 139
           A  P + TT  S  P G
Sbjct: 479 AKPPTKKTTPQSMIPPG 495


>SB_41697| Best HMM Match : UPF0153 (HMM E-Value=5.1)
          Length = 72

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/42 (38%), Positives = 19/42 (45%)

Query: 5  RYNENLDNTVNYVATLAFFCGISCVTIMLKFGGFKASLNIFN 46
          R ++ LDNT  YV      CGI C    L   G K S  + N
Sbjct: 27 RLSKALDNTCVYVNKKVSSCGIRCQIYELWTKGEKVSCGVIN 68


>SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 70  NRDDVSGYVSTPSPTKTLSPAMVKLPGRKPCCLLTTRPTKSLGNLTLATSSTMKAVPNQN 129
           N D+V   V+TPSP   + P++      +    ++  PT       +  S+T + VP  N
Sbjct: 100 NNDNVPS-VNTPSPV--VPPSVASTSSPQSASSMSQNPTNIDPTQVVPPSNTTQVVPPPN 156

Query: 130 TTDVSTDP 137
            T  S  P
Sbjct: 157 ITHPSNQP 164


>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
          Length = 514

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 80  TPSPTKTLSPAMVKLPGRKPCCLLTTRPTKSLGNLTLATSSTMKAVPNQNTTDVSTDPRG 139
           TP PTK    A+++ P  +P    T +PTK L    +      +A P       +T  R 
Sbjct: 326 TPRPTKAKPTAIIRKPTERP----TKKPTKPL-LPEVEPEEEERATPRPTKAKPTTIKRR 380

Query: 140 DGDRDIKNPS 149
             +R  K P+
Sbjct: 381 PTERPTKKPT 390



 Score = 28.3 bits (60), Expect = 8.6
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 79  STPSPTKTLSPAMVKLPGRKPCCLLTTRPTKSLGNLTLATSSTMKAVPNQNTTDVSTDPR 138
           +TP PTK     M + P  +P    T +PTK L    +      KA P       +T  R
Sbjct: 202 ATPRPTKAKPTTMKRRPTERP----TKKPTKPL-LPEVEPEEEEKATPRPTKAKPTTIKR 256

Query: 139 GDGDRDIKNPS 149
              +R  K P+
Sbjct: 257 RPTERPTKKPT 267


>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 79  STPSPTKTLSPAMVKLPGRKPCCLLTTRPTKSLGNLTLATSSTMKAVPNQNTTDVST 135
           +T +P  TL+P     P      L+TT P  +  +L      T  A P   T  ++T
Sbjct: 493 TTTAPEATLAPEATTAPEAATASLVTTAPETTTASLATTAPETTTA-PETTTASLAT 548


>SB_11265| Best HMM Match : LRR_1 (HMM E-Value=0.23)
          Length = 174

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 11/75 (14%)

Query: 11  DNTVNYVATLAFFCGISCVTIML------KFGG----FKASLNIFNSRKNGK-EKTELHQ 59
           DN ++Y+ T AF   I   +++L      KF         SLN F SR+NG     +   
Sbjct: 72  DNRISYIETGAFNACIELRSLLLGQNKITKFSPDILVASRSLNFFGSRRNGDGHGVDKRS 131

Query: 60  GSYMTGAYRTNRDDV 74
               +GA R N DD+
Sbjct: 132 DDDDSGAKRNNDDDI 146


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 77   YVSTPSPTKTLSPAMVKLP-GRKPCCLLTTRPTKSLGNLTLATSSTMKAVPNQNTTDVST 135
            + +T +P    S    K+P  +     +TT+ T    N  LATS T     N+ +T  + 
Sbjct: 1360 FAATATPQSQASFPATKIPQSQATFAAITTKTTVQSSNQILATSKTTDLEINEESTQTAY 1419

Query: 136  D 136
            D
Sbjct: 1420 D 1420


>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 79  STPSPTKTLSPAMVKLPGRKPCCLLTTRPTKSLGNLTLATSSTMKAVPNQNTTDV 133
           ST  PT T+ P    +P        T  PT ++   T+   +T     +++T++V
Sbjct: 165 STVEPTSTVEPTSTVVPTSTVVPTSTVEPTSTVEPTTMMAPTTESPTSSRSTSEV 219


>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 6   YNENLDNTVNYVATLAFFCGISCVTIMLKFGGFKASLNIFNSRKNGK 52
           Y +NL N  N +AT+  F       I++ F GF+  L I ++R  G+
Sbjct: 938 YRQNLPNLTNLIATIFVF------GIVIYFQGFRVDLPIKSARYRGQ 978


>SB_15222| Best HMM Match : Glycoprotein_G (HMM E-Value=0.84)
          Length = 244

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 78  VSTPSPTKTLSPAMVKLPGRKPCCLLTTRPTKSLGNLTLATSSTMKAVPNQNTTDVSTDP 137
           V+TP PT   +      P  +P  + TT PT     +     +T    P   T +  TDP
Sbjct: 157 VTTPVPTTESTAVPTTAPTTEPTTVPTTIPTTIPTTVPTTEPTTAPTTPEPTTLE-PTDP 215

Query: 138 RGDGD 142
              G+
Sbjct: 216 PTTGE 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.127    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,885,778
Number of Sequences: 59808
Number of extensions: 384748
Number of successful extensions: 988
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 975
Number of HSP's gapped (non-prelim): 30
length of query: 313
length of database: 16,821,457
effective HSP length: 82
effective length of query: 231
effective length of database: 11,917,201
effective search space: 2752873431
effective search space used: 2752873431
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 60 (28.3 bits)