GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000877-TA|BGIBMGA000877-PA|undefined
         (313 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.4  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   8.0  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   8.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   8.0  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
          protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 13 TVNYVATLAFFCGISCVTIMLKFGGFKASLNIF-NSRKNG 51
          T+NY+     + G     I++KF G  +SLN+  N   NG
Sbjct: 60 TMNYLLDTDQW-GDKTFVIIMKFNGVPSSLNVITNKTGNG 98


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 239 PPYSETATELVTLDASDATRDVSF 262
           PPYSET  E +  + S   + + +
Sbjct: 87  PPYSETRFEEIKKEVSSYIKKIGY 110


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 239 PPYSETATELVTLDASDATRDVSF 262
           PPYSET  E +  + S   + + +
Sbjct: 103 PPYSETRFEEIKKEVSSYIKKIGY 126


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 239 PPYSETATELVTLDASDATRDVSF 262
           PPYSET  E +  + S   + + +
Sbjct: 160 PPYSETRFEEIKKEVSSYIKKIGY 183


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.127    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,380
Number of Sequences: 429
Number of extensions: 3568
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 313
length of database: 140,377
effective HSP length: 58
effective length of query: 255
effective length of database: 115,495
effective search space: 29451225
effective search space used: 29451225
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)