GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000877-TA|BGIBMGA000877-PA|undefined
         (313 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07730.2 68414.m00834 disease resistance-responsive family pr...    31   1.00 
At1g77970.1 68414.m09086 hydroxyproline-rich glycoprotein family...    29   3.0  
At3g04810.1 68416.m00520 protein kinase, putative similar to LST...    29   4.0  
At3g47600.1 68416.m05182 myb family transcription factor (MYB94)...    29   5.3  
At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit, ...    29   5.3  
At2g30710.1 68415.m03746 RabGAP/TBC domain-containing protein si...    28   7.0  
At1g65630.1 68414.m07444 DegP protease, putative contains simila...    28   7.0  
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi...    28   9.3  

>At1g07730.2 68414.m00834 disease resistance-responsive family
           protein contains Pfam PF03018: Plant disease resistance
           response protein
          Length = 389

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 206 PQPQQQSVPSLGHGSAKYSINTLDSSISRSTGPPPYSETATELVTLDASDATRDVSFGKP 265
           P P   S P+ G  S   S +    S+  +TGP P S T + L+ + AS  T  V+   P
Sbjct: 51  PFPTANSGPATGIASGTGSASGGLGSLGTNTGPGPLSTTGSSLLPV-ASSGTLPVTGPGP 109

Query: 266 IDTGT 270
           + T +
Sbjct: 110 LPTSS 114


>At1g77970.1 68414.m09086 hydroxyproline-rich glycoprotein family
           protein 
          Length = 76

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 79  STPSPTKTLSPAMVKLPGRKPCCLLTTRPT 108
           STP+P    +P  +  P   PCC  TT  T
Sbjct: 42  STPTPIPEPAPTPIPEPAPAPCCTTTTTTT 71


>At3g04810.1 68416.m00520 protein kinase, putative similar to
           LSTK-1-like kinase [Lycopersicon esculentum]
           GI:15637110; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 606

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 107 PTKSLGNLTLATSSTMKAVP----NQNTTDVSTDPRGDG 141
           P++  GNL  + SS  K VP     +   D+STD  GDG
Sbjct: 308 PSRFRGNLEDSVSSIKKTVPAYLNRERQVDLSTDASGDG 346


>At3g47600.1 68416.m05182 myb family transcription factor (MYB94)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to cDNA putative transcription factor
           (MYB94) GI:3941527
          Length = 333

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 204 KAPQPQQQSVPSLGHG-SAKYSINTLDSSISRSTGPPP---YSETATELVTL 251
           K   P   S+P LG+G S+  S  T  ++ +R+T P P   Y+ +A  +  L
Sbjct: 179 KPQNPTNFSIPDLGYGPSSSSSSTTTTTTTTRNTNPYPSGVYASSAENIARL 230


>At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit,
           putative similar to cellulose synthase-1 [gi:9622874]
           and -2 [gi:9622876] from Zea mays
          Length = 1065

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 69  TNRDDVSGYVSTPSPTKTLSPAM-VKLPGRKPCCLLTTR---PTKSLGNLTLATSSTMKA 124
           T+   VSG + TP    TLSP +  +LPG     LL  R   P+K L +  L      K 
Sbjct: 141 THGHPVSGEIPTPDRNATLSPCIDPQLPGIYQLLLLPVRILDPSKDLNSYGLVNVDWKKR 200

Query: 125 V 125
           +
Sbjct: 201 I 201


>At2g30710.1 68415.m03746 RabGAP/TBC domain-containing protein
           similar to SP|Q08484 GTPase-activating protein GYP1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00566: TBC domain
          Length = 440

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 232 ISRSTGPPPYSETATELVTLDASDATRDVSFGKPID 267
           ++R + PPPY  + T   +L  +DA R+  F  P++
Sbjct: 38  LTRRSDPPPYPISPTYQRSLSENDAGRNELFESPVE 73


>At1g65630.1 68414.m07444 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 559

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 210 QQSVPSLGHGSAKYSINTLDSSISRSTGPPPYSETATELVTLDASDATRDVSFGKPIDTG 269
           Q +V  +G+     +I+     +SR  GP  YS + TEL+ +    A  + + G P+  G
Sbjct: 196 QDTVYVVGYPKGGDTISVSKGVVSR-VGPIKYSHSGTELLAIQIDAAINNGNSGGPVIMG 254


>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
           to DNA repair by nucleotide excision (NER) RAD23
           protein, isoform II GI:1914685 from [Daucus carota]
          Length = 368

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 104 TTRPTKSLGNLTLATSSTMK--AVPNQNTTDVSTDPRGDGD 142
           T+  T ++ + TLA  ST +  AVP  N+T V   P    D
Sbjct: 91  TSTTTSTISSTTLAAPSTTQSIAVPASNSTPVQEQPTAQSD 131


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.311    0.127    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,750,711
Number of Sequences: 28952
Number of extensions: 264587
Number of successful extensions: 597
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 9
length of query: 313
length of database: 12,070,560
effective HSP length: 81
effective length of query: 232
effective length of database: 9,725,448
effective search space: 2256303936
effective search space used: 2256303936
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 59 (27.9 bits)