Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000876-TA|BGIBMGA000876-PA|IPR000734|Lipase,
IPR013818|Lipase, N-terminal
         (250 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31910.1 68417.m04534 transferase family protein low similari...    32   0.42 
At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar...    31   0.98 
At3g62930.1 68416.m07069 glutaredoxin family protein contains gl...    28   5.2  
At1g53080.1 68414.m06010 legume lectin family protein                  28   5.2  
At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel...    28   5.2  

>At4g31910.1 68417.m04534 transferase family protein low similarity
           to anthranilate N-hydroxycinnamoyl/benzoyltransferase
           Dianthus caryophyllus GI:3288180, 10-deacetylbaccatin
           III-10-O-acetyl transferase Taxus cuspidata GI:6746554;
           contains Pfam profile PF02458 transferase family
          Length = 458

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 85  GLDPAGPCYRNMNPKDRFNAEGAVKVDALHTNIDGFGIADSIAQIDFYANGGEFQPALAG 144
           GLD  G C  N+    R N  GAV V+A+ T +    + D     +FY N   ++P+L G
Sbjct: 83  GLDGGG-CKLNI----RCNDGGAVMVEAVATGVKLSELGDLTQYNEFYEN-LVYKPSLDG 136

Query: 145 DF-IMP 149
           DF +MP
Sbjct: 137 DFSVMP 142


>At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar to
           receptor-like protein kinase (Ipomoea nil) (U77888)
          Length = 1029

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)

Query: 58  GSLGAHIGYYASVKYYELTSRKPARLTGLDPAGPCY-RNMNPKDRFN 103
           GSL  H+G  + +K+ +++S K   L+G  P+G CY RN+     FN
Sbjct: 355 GSLPVHLGKNSPLKWLDVSSNK---LSGDIPSGLCYSRNLTKLILFN 398


>At3g62930.1 68416.m07069 glutaredoxin family protein contains
           glutaredoxin domain, INTERPRO:IPR002109
          Length = 102

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 102 FNAEGAVKVDALHTNIDGFGIADSIAQIDFYANGGEFQPAL 142
           F+        ++ T I GFG   ++ ++D ++NG E + AL
Sbjct: 16  FSKSSCCMSHSIQTLISGFGAKMTVYELDQFSNGQEIEKAL 56


>At1g53080.1 68414.m06010 legume lectin family protein
          Length = 283

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 169 NPDKFL-AVRCDSVADVRHGDCYDGNITSNVLGPRTEFNEPGIYYLPTK 216
           NP+  L AV  D   D R GD  D ++  N+    ++ +E   Y++ T+
Sbjct: 144 NPNNHLFAVEFDVFQDKRFGDINDNHVGVNINSVNSKVSEKAGYWIQTR 192


>At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel
           (CNGC10) (ACBK1) almost identical to CaM-regulated
           potassium ion channel (ACBK1) GI:8515883 from
           [Arabidopsis thaliana]; contains Pfam domain, PF00520:
           Ion transport protein
          Length = 706

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 151 FQLCSHVRAAMYWILAYTNPDKFLAVRCDSVADVRHGDCY---DGNITSNVLGPRTEFNE 207
           + L SHV  A++++++    D+     C+          Y   D N+++N L     F +
Sbjct: 245 YMLASHVFGALWYLISVEREDRCWQEACEKTKGCNMKFLYCENDRNVSNNFLTTSCPFLD 304

Query: 208 PG 209
           PG
Sbjct: 305 PG 306


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.141    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,983,312
Number of Sequences: 28952
Number of extensions: 244918
Number of successful extensions: 367
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 5
length of query: 250
length of database: 12,070,560
effective HSP length: 79
effective length of query: 171
effective length of database: 9,783,352
effective search space: 1672953192
effective search space used: 1672953192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)