GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000876-TA|BGIBMGA000876-PA|IPR000734|Lipase,
IPR013818|Lipase, N-terminal
         (250 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   1.7  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      22   3.9  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   3.9  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   3.9  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.0  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 162 YWILAYTNPDKFLAVRCDSVADVRH 186
           +W + ++  D F    CD+   +RH
Sbjct: 71  FWTILFSRSDFFQQFECDNEPKLRH 95


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/39 (23%), Positives = 17/39 (43%)

Query: 157 VRAAMYWILAYTNPDKFLAVRCDSVADVRHGDCYDGNIT 195
           V A   W+   +      +V+ +S    ++G C+ G  T
Sbjct: 78  VEAGFDWVYYESRAHIHCSVKSESSQAAKYGGCFSGEST 116


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 91  PCYRNMNPKDRF 102
           PC RN NP D F
Sbjct: 317 PCPRNYNPADYF 328


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 91  PCYRNMNPKDRF 102
           PC RN NP D F
Sbjct: 317 PCPRNYNPADYF 328


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 9   VAMLDTFPILLRPYPI 24
           + + D  P L RPYP+
Sbjct: 298 IKLHDKTPFLKRPYPV 313


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.141    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,448
Number of Sequences: 317
Number of extensions: 2541
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 250
length of database: 114,650
effective HSP length: 55
effective length of query: 195
effective length of database: 97,215
effective search space: 18956925
effective search space used: 18956925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)