GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000876-TA|BGIBMGA000876-PA|IPR000734|Lipase,
IPR013818|Lipase, N-terminal
         (250 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    30   0.37 
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   6.0  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   7.9  

>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 87  DPAGPCYRNMNPKDRFNAEGAVKVDALHTNIDGFGIADSIAQIDFYA 133
           DP  P  RN+ P+D    +GA   + ++ +  GFG+     QI F A
Sbjct: 273 DPTVPWDRNLFPEDANARDGAALDNHIYMDSMGFGMGCCCLQITFQA 319


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 62  AHIGYYASVKYYELTSRKPARLTGLDPAGPCYRNMNPKDRFNA 104
           +HI  +AS  +    +  P  L+   PA P   N NP   F++
Sbjct: 212 SHISPFASGSFSPFATSSPNFLSTSTPAPPNSNNANPSTLFSS 254


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 210 IYYLPTKEVSPYYLGNE 226
           +YYLP KE + Y  G E
Sbjct: 525 VYYLPNKEANTYNAGKE 541


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.141    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,153,594
Number of Sequences: 5004
Number of extensions: 46761
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 3
length of query: 250
length of database: 2,362,478
effective HSP length: 71
effective length of query: 179
effective length of database: 2,007,194
effective search space: 359287726
effective search space used: 359287726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)