GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000876-TA|BGIBMGA000876-PA|IPR000734|Lipase,
IPR013818|Lipase, N-terminal
         (250 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0783 - 21166491-21166892,21167139-21167251,21168127-211682...    29   3.6  
06_03_0354 - 19818925-19819032,19819194-19819330,19819577-19819637     29   4.7  
04_04_1030 - 30249160-30250403,30250787-30251666                       28   8.3  
03_03_0132 + 14711645-14711839,14712641-14712970,14713689-147137...    28   8.3  

>08_02_0783 -
           21166491-21166892,21167139-21167251,21168127-21168208,
           21168298-21168416,21168471-21168528,21168954-21169016,
           21169641-21169850,21171549-21171731
          Length = 409

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 103 NAEGAVKVDALHTNIDGFGIADSIAQIDFYANGG 136
           N + AV VD LHT    FG    IA   F  NGG
Sbjct: 199 NMQYAVTVDVLHTVFSAFGTVQKIAM--FEKNGG 230


>06_03_0354 - 19818925-19819032,19819194-19819330,19819577-19819637
          Length = 101

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 96  MNPKDRFNAEGAVKVDALHTNIDGFGIADSIA 127
           M+P  +   +G VKVDA H  +D   + DS A
Sbjct: 64  MSPLRKGQIDGDVKVDAEHVGVDSHDVQDSQA 95


>04_04_1030 - 30249160-30250403,30250787-30251666
          Length = 707

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 160 AMYWILAYTNPDKFLAVRCDSVADVRHGDCYDGNITSNVL 199
           A  ++ ++T  +KF AV CD++A +R+     GN  S V+
Sbjct: 109 ATNYMFSHTQ-NKFTAVGCDAMAMIRNSSDVVGNTNSTVM 147


>03_03_0132 +
           14711645-14711839,14712641-14712970,14713689-14713751,
           14713833-14713906,14714004-14714099,14714705-14714759,
           14714867-14714971,14715054-14715135,14715450-14715562,
           14715717-14716118
          Length = 504

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 103 NAEGAVKVDALHTNIDGFGIADSIAQIDFYANGG 136
           N + AV VD LHT    FG    IA   F  NGG
Sbjct: 294 NMQYAVTVDVLHTVFSAFGTVQKIA--IFEKNGG 325


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.141    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,583,367
Number of Sequences: 37544
Number of extensions: 317117
Number of successful extensions: 462
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 4
length of query: 250
length of database: 14,793,348
effective HSP length: 80
effective length of query: 170
effective length of database: 11,789,828
effective search space: 2004270760
effective search space used: 2004270760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)