GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000876-TA|BGIBMGA000876-PA|IPR000734|Lipase,
IPR013818|Lipase, N-terminal
         (250 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U00035-6|AAA50647.1|  315|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AM231686-1|CAJ77755.1|  315|Caenorhabditis elegans GDP-4-keto-6-...    29   3.1  

>Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical
           protein F14D7.2 protein.
          Length = 457

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 98  PKDRFNAEGAVKVDALHTNIDGFGIADSI 126
           PKD   A  AV +D LH N+ G+G  D +
Sbjct: 388 PKDVSPATNAVLLDKLHDNMAGYGKVDDV 416


>U00035-6|AAA50647.1|  315|Caenorhabditis elegans Hypothetical
           protein R01H2.5 protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/63 (26%), Positives = 24/63 (38%)

Query: 186 HGDCYDGNITSNVLGPRTEFNEPGIYYLPTKEVSPYYLGNEGLKKSMYGVNAYLLKPAPD 245
           HG  Y   +  NV GP   +N    + LP      Y    +G    +YG    L +    
Sbjct: 155 HGRKYTSVVPCNVFGPHDNYNLQSGHVLPALIHKAYVAQRDGTPLQVYGSGTPLRQFIYS 214

Query: 246 IDM 248
           ID+
Sbjct: 215 IDL 217


>AM231686-1|CAJ77755.1|  315|Caenorhabditis elegans
           GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4- reductase
           protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/63 (26%), Positives = 24/63 (38%)

Query: 186 HGDCYDGNITSNVLGPRTEFNEPGIYYLPTKEVSPYYLGNEGLKKSMYGVNAYLLKPAPD 245
           HG  Y   +  NV GP   +N    + LP      Y    +G    +YG    L +    
Sbjct: 155 HGRKYTSVVPCNVFGPHDNYNLQSGHVLPALIHKAYVAQRDGTPLQVYGSGTPLRQFIYS 214

Query: 246 IDM 248
           ID+
Sbjct: 215 IDL 217


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.141    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,184,652
Number of Sequences: 27539
Number of extensions: 254561
Number of successful extensions: 352
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 3
length of query: 250
length of database: 12,573,161
effective HSP length: 80
effective length of query: 170
effective length of database: 10,370,041
effective search space: 1762906970
effective search space used: 1762906970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)