GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000873-TA|BGIBMGA000873-PA|undefined
         (83 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   4.0  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    19   5.3  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    19   5.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      19   7.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 19.8 bits (39), Expect = 4.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 42 KTEHSYSLHSDVESAPPSPHHTKVDAI 68
          K+  SYS + +V  A  SP   KV+ +
Sbjct: 53 KSGGSYSSNKNVSRADHSPVFGKVEPV 79



 Score = 19.0 bits (37), Expect = 7.1
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 34  ALGAAAPIKTEHSYSLHS--DVE-SAPPSPHH 62
           ++  A+P   +   + H   DV+   PP PHH
Sbjct: 712 SVSVASPYMLQSPLTPHEAFDVKLPPPPHPHH 743


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 19.4 bits (38), Expect = 5.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 25  LHDRLMTDAALG 36
           LH+  +TD ALG
Sbjct: 215 LHEATLTDLALG 226


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
          protein.
          Length = 312

 Score = 19.4 bits (38), Expect = 5.3
 Identities = 5/29 (17%), Positives = 13/29 (44%)

Query: 49 LHSDVESAPPSPHHTKVDAIFMSAPYIQI 77
          +  +    PP+PH +        + +I++
Sbjct: 1  MSGEAHIGPPTPHESNTSTPVSKSAFIEL 29


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 19.0 bits (37), Expect = 7.1
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 34  ALGAAAPIKTEHSYSLHS--DVE-SAPPSPHH 62
           ++  A+P   +   + H   DV+   PP PHH
Sbjct: 604 SVSVASPYMLQSPLTPHEAFDVKLPPPPHPHH 635


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,114
Number of Sequences: 317
Number of extensions: 629
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 83
length of database: 114,650
effective HSP length: 46
effective length of query: 37
effective length of database: 100,068
effective search space:  3702516
effective search space used:  3702516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
S2: 36 (18.6 bits)