Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000873-TA|BGIBMGA000873-PA|undefined
(83 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar... 26 0.60
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 25 1.0
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 24 2.4
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 24 3.2
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 23 4.2
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 23 4.2
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 23 5.6
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr... 23 7.3
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 22 9.7
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch... 22 9.7
SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc... 22 9.7
>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 0.60
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 6 DEDERSDWLIERDSKSGVVLHD--RLMTDAALGAAAPIKTEHSYSLHSDVESAPPSP 60
+ED+ S+W E DS+S V + + + + + T+HS ++ V +APP P
Sbjct: 113 EEDDSSNWETE-DSESAVEEAELPTIFEGKTVISPSSSGTDHSEAVEYTVPTAPPIP 168
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 25.4 bits (53), Expect = 1.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 32 DAALGAAAPIKTEHSYSLHSDVESAPPSP 60
D L P+KT Y SD +S P +P
Sbjct: 171 DKRLNCLVPLKTFQFYVTESDQDSTPATP 199
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 24.2 bits (50), Expect = 2.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 26 HDRLMTDAALGAAAPIKTEHSYSLHSDVESAPPSPHHTKVDA 67
+D ++T+++ P SYS SD S PSP H+ VD+
Sbjct: 100 NDDVVTNSS-SHRTPRHHRRSYSPRSDYGSRSPSP-HSSVDS 139
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 40 PIKTEHSYSLHSDVESAPPSPHHTKVDAIFMSAPYIQI 77
P++T HS SL + S + + ++ F+++P+ +
Sbjct: 161 PVRTNHSSSLSNSSNSLLQTESSLRPNSSFVNSPFFPL 198
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 23.4 bits (48), Expect = 4.2
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 35 LGAAAPIKTEHSYSLHS-DVESAPPSPHHTKVDAIFMSAPYIQIGI 79
+GA P S+ DV+S PP ++ APYI G+
Sbjct: 150 MGAVPPYTITLSHIFGKLDVDSLPPITESKAIELSPSDAPYITKGL 195
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 23.4 bits (48), Expect = 4.2
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 34 ALGAAAPIKTEHSYSLHSDVESAPPSPHHTK 64
A G P E+ + + S PPSPH K
Sbjct: 77 AAGFCPPQFEEYHHGRSHSLVSPPPSPHFLK 107
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 23.0 bits (47), Expect = 5.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 27 DRLMTDAALGAAAPIKTEHSYSLHSDVESAP 57
D ++T + ++ PI+T SYS SD P
Sbjct: 397 DFIVTPSFFNSSQPIETPSSYSHLSDTMLVP 427
>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 9 ERSDWLIERDSKSGV 23
E +DW IE+ KSG+
Sbjct: 57 EMNDWCIEQHGKSGL 71
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 3 DILDEDERSDW 13
DIL EDE DW
Sbjct: 542 DILSEDELEDW 552
>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 187
Score = 22.2 bits (45), Expect = 9.7
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 27 DRLMTDAALGAAAPIKTEHSYSLHSDVESAPPSPHHTKV 65
D+L+ AAP + +Y H V + SP H ++
Sbjct: 110 DKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEI 148
>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 22.2 bits (45), Expect = 9.7
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 27 DRLMTDAALGAAAPIKTEHSYSLHSDVESAPPSPHHTKV 65
D+L+ AAP + +Y H V + SP H ++
Sbjct: 110 DKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEI 148
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.132 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 373,220
Number of Sequences: 5004
Number of extensions: 12054
Number of successful extensions: 39
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 11
length of query: 83
length of database: 2,362,478
effective HSP length: 60
effective length of query: 23
effective length of database: 2,062,238
effective search space: 47431474
effective search space used: 47431474
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)
- SilkBase 1999-2023 -