Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000873-TA|BGIBMGA000873-PA|undefined
(83 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.13
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.54
SB_46153| Best HMM Match : LRR_1 (HMM E-Value=0.0017) 28 1.3
SB_36636| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12) 26 3.8
SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092) 26 3.8
SB_32661| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.1
SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016) 26 5.1
SB_5595| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.1
SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35) 25 8.8
SB_40922| Best HMM Match : JmjC (HMM E-Value=0.092) 25 8.8
SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5) 25 8.8
>SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2431
Score = 31.1 bits (67), Expect = 0.13
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 1 MHDILDEDERSDWLIERDSKSGVVLHDRLMTDAALGAAAPIKTEHSYSLHSDVESA 56
+ D+L ++LI R KS ++L RLMTD A I HS++LH+ ES+
Sbjct: 2375 IQDLLGTATHCEFLI-RLQKSRLMLK-RLMTDIGRNDACNITLTHSFTLHNASESS 2428
>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 29.1 bits (62), Expect = 0.54
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 1 MHDILDEDERSDWLIERDSKSGVVLHDRLMTDAALGAAAPIKTEHSYSLHSDVE 54
+ D+L ++LI R KS ++L RLMTD A I HS++LH+ E
Sbjct: 214 IQDLLGTATHCEFLI-RLQKSRLMLK-RLMTDIGRNDACNITLTHSFTLHNASE 265
>SB_46153| Best HMM Match : LRR_1 (HMM E-Value=0.0017)
Length = 391
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 24 VLHDRLMTDAALGAAAPIKTEHSYSLHSDVESAPPSPHHTKVDAIFMSA 72
V+ D+ +TDAA PI++ + D ++ + H + D I ++A
Sbjct: 252 VIIDKWVTDAATRKKKPIRSGQRLKFYKDTDNTEKTEKHKEKDNITITA 300
>SB_36636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 27 DRLMTDAALGAAAPIKTEHSYSLHSDVESA 56
+RLMTD A I HS++LH+ ES+
Sbjct: 366 ERLMTDIDGNDACNITLTHSFTLHNASESS 395
>SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12)
Length = 492
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 3 DILDEDERSDWLIERDSKSGVVLHDRLMTDAALGAAAPIKTEHSYSLHSDVES 55
D+ D+D SDW + + S +G+ + + D L PI + + H D ES
Sbjct: 269 DMDDDDALSDWNLRKCSAAGLDVLANVFRDDLLPVLLPILKDTLF--HPDWES 319
>SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)
Length = 676
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 8/30 (26%)
Query: 10 RSDWLIERDSKSGVVLHDRLMTDAALGAAA 39
R+DWL E+D D +MTD ALGA +
Sbjct: 509 RNDWLDEKD--------DEMMTDGALGAGS 530
>SB_32661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 28 RLMTDAALGAAAPIKTEHSYSLHSDVESA 56
RLMTD A I HS++LH+ ES+
Sbjct: 23 RLMTDIDGNDACNITLTHSFTLHNASESS 51
>SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016)
Length = 1284
Score = 25.8 bits (54), Expect = 5.1
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 5 LDEDERSDWLIERD----SKSGVVLHDRLMTDAALGAAAPIKTEHSYSLHSDVESAPPSP 60
L+ED SDW ++ D +S + + D L TD ++ HS S+ +S PP P
Sbjct: 188 LEEDLDSDWSVDSDEVVVERSSIYVPDYLQTDRSVNNGK--ACFHSSQSGSN-DSPPPFP 244
>SB_5595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 28 RLMTDAALGAAAPIKTEHSYSLHSDVESA 56
RLMTD A I HS++LH+ ES+
Sbjct: 28 RLMTDIDGNDACNITLTHSFTLHNASESS 56
>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
Length = 415
Score = 25.0 bits (52), Expect = 8.8
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 3 DILDEDERSDWLIERDSKSGVVLHDRLMTDAALGAAAPIKTEHSYSLHSDVESA 56
+IL R ++LI R KS + LMTD A I HS++LH+ ES+
Sbjct: 364 EILGTATRCEFLI-RLPKS----REHLMTDIDGNDACNITLTHSFTLHNASESS 412
>SB_40922| Best HMM Match : JmjC (HMM E-Value=0.092)
Length = 403
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 23 VVLHDRLMTDAALGAAAPIKTEHSYSLHSDVESAPPSPH 61
VVL L TD G P+ + D S PPSPH
Sbjct: 13 VVLSSTLATDPP-GHLQPLGSHRPAEGEVDAVSKPPSPH 50
>SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5)
Length = 297
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 32 DAALGAAAPIKTEHSYSLHSDVESAPPSPH 61
+ A+GA + E S S D ES PP PH
Sbjct: 74 EEAIGAKSE-NEEKSESSSGDSESPPPKPH 102
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.132 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,300
Number of Sequences: 59808
Number of extensions: 86739
Number of successful extensions: 260
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 12
length of query: 83
length of database: 16,821,457
effective HSP length: 60
effective length of query: 23
effective length of database: 13,232,977
effective search space: 304358471
effective search space used: 304358471
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)
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