GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000873-TA|BGIBMGA000873-PA|undefined
         (83 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117195-12|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical...    28   0.71 
Z46242-9|CAA86334.2|  491|Caenorhabditis elegans Hypothetical pr...    27   1.2  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    26   2.9  
Z69662-5|CAA93500.3|  449|Caenorhabditis elegans Hypothetical pr...    25   5.0  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    25   5.0  
AF040647-2|AAB94995.3|  299|Caenorhabditis elegans Hypothetical ...    25   5.0  
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    25   6.6  
U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical pr...    25   6.6  
AF318610-1|AAK01098.1|  396|Caenorhabditis elegans ionotropic gl...    25   6.6  
AC006637-5|AAM54176.2|  844|Caenorhabditis elegans Glutamate rec...    25   6.6  
U41268-3|AAA82436.1|  270|Caenorhabditis elegans Forkhead transc...    25   8.8  
U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical p...    25   8.8  
U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical p...    25   8.8  
AF025458-2|AAB70978.1|  557|Caenorhabditis elegans Hypothetical ...    25   8.8  

>AL117195-12|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical
           protein Y57A10A.15 protein.
          Length = 1072

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 1   MHDILDEDERSDWLIE---RDSKSGVV-LHDRLMTDAALGA 37
           M+D+   D  SDW+     R SK+ +V +HD L  D A+ A
Sbjct: 248 MYDVETNDSHSDWMNAWKGRVSKNSLVAVHDHLYPDKAINA 288


>Z46242-9|CAA86334.2|  491|Caenorhabditis elegans Hypothetical
          protein F35G12.12 protein.
          Length = 491

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 2  HDILDEDERSDWLIERDSKSGVVLHDRLMTDAALGAAAPIKTE 44
          H+ L E+ R+D++ ER SK G  + ++L     + AA  ++TE
Sbjct: 7  HEKLIEEWRNDYIAERSSKKGWEILEKL-AKMQIEAAQQMETE 48


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
           protein D1007.15 protein.
          Length = 1184

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 4   ILDEDERSDWLIERDSKSGVVLHDRLMTDAALGAAAPIKTEHSYSLHSD 52
           +L E +R  W I+ D KSG V  D L    A     PIK     +L +D
Sbjct: 192 VLAEGDRLSWDIKSDKKSGFV--DPLEPVYARVTCYPIKNHLETALSAD 238


>Z69662-5|CAA93500.3|  449|Caenorhabditis elegans Hypothetical
           protein F56D5.6 protein.
          Length = 449

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 3   DILDEDERSDWLIERDSKSGVVLHDRLMTDAALGAAA 39
           +I D  E S  +++ D+  GVVL D+ +TD  +   A
Sbjct: 362 EIADSPEES--VVDADNLDGVVLPDQTLTDEEIAKIA 396


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 4    ILDEDERSDWLIERDSKSGVV 24
            I+ E++RSDW+I+ +   G V
Sbjct: 3317 IISENQRSDWIIDHEIVKGRV 3337


>AF040647-2|AAB94995.3|  299|Caenorhabditis elegans Hypothetical
           protein F54D12.5 protein.
          Length = 299

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 41  IKTEHSYSLHSDVESAPPSPHHTKVDA 67
           I  E   +LH+  E +PP P H ++ A
Sbjct: 180 IDVETLTNLHTTTEPSPPLPRHHQIQA 206


>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical
           protein R11A8.6 protein.
          Length = 1141

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 5   LDEDERSDWLIERDSKSGVVLHDRLMTDAALGAAAPIKTEHSYSLHSDVES 55
           + E E   +L+E   K  V+ H+    + A+  AA     H Y  HSD ++
Sbjct: 913 ITESELEKFLLE--GKLTVLGHELSSEEVAVSYAAGSDQGHGYKTHSDAKT 961


>U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical
           protein F47E1.3 protein.
          Length = 594

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 13  WLIERDSK-SGVVLHDRLMTDAALGAAAPIKTEHSYSLHSDVE 54
           W   ++S  S  ++H +++TD A GA   I    +    S+VE
Sbjct: 402 WRFAKESSHSANIVHSKVVTDIACGAEIVISRTPTEDRKSEVE 444


>AF318610-1|AAK01098.1|  396|Caenorhabditis elegans ionotropic
           glutamate receptor GLR-6 protein.
          Length = 396

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 9/33 (27%), Positives = 22/33 (66%)

Query: 51  SDVESAPPSPHHTKVDAIFMSAPYIQIGIKLVL 83
           +D+  AP +   T+++ I  + P++Q+GI +++
Sbjct: 73  ADMAVAPITVTATRLEVIDFTDPFLQLGISMLM 105


>AC006637-5|AAM54176.2|  844|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 6, isoform a protein.
          Length = 844

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 9/33 (27%), Positives = 22/33 (66%)

Query: 51  SDVESAPPSPHHTKVDAIFMSAPYIQIGIKLVL 83
           +D+  AP +   T+++ I  + P++Q+GI +++
Sbjct: 485 ADMAVAPITVTATRLEVIDFTDPFLQLGISMLM 517


>U41268-3|AAA82436.1|  270|Caenorhabditis elegans Forkhead
          transcription factor familyprotein 2, isoform a
          protein.
          Length = 270

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 1  MHDILDEDERSDWLIERDSKS 21
          +HD   +DERS+  + +DSKS
Sbjct: 56 LHDESIDDERSESTLSKDSKS 76


>U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical
           protein C17G10.6b protein.
          Length = 487

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 40  PIKTEHSYSLHSDVESAPPSPHH 62
           P  ++H + +  D ++ PP P H
Sbjct: 80  PAHSDHDHGVDYDEQTTPPPPRH 102


>U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical
           protein C17G10.6a protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 40  PIKTEHSYSLHSDVESAPPSPHH 62
           P  ++H + +  D ++ PP P H
Sbjct: 131 PAHSDHDHGVDYDEQTTPPPPRH 153


>AF025458-2|AAB70978.1|  557|Caenorhabditis elegans Hypothetical
           protein C01B12.5 protein.
          Length = 557

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 6   DEDERSDWLIERDSKSGVVLHDR 28
           DED  ++W+IER+ + G  + D+
Sbjct: 304 DEDFETNWIIERNLQVGYAVVDQ 326


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,114
Number of Sequences: 27539
Number of extensions: 67764
Number of successful extensions: 220
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 15
length of query: 83
length of database: 12,573,161
effective HSP length: 62
effective length of query: 21
effective length of database: 10,865,743
effective search space: 228180603
effective search space used: 228180603
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)